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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCTGAAATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaaggagtatttttagaaattttactcattgcaatcatttgaatcaatttgactcatgaaatacttttgttacaaagaggatgtagaaaaattgaagcaacaatttaggctcaatgtgcttaaaaaatgctatttttcctttcctatctgatattaacaacctgcggtatgcaataacttctacag

Basic information

species Glycine max
transcript GLYMA12G03540.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03540.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g02200.t01 (Vitis vinifera), 5'ss of exon 2
GTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCTGAAATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaaggagtatttttagaaattttactcattgcaatcatttgaatcaatttgactcatgaaatacttttgttacaaagaggatgtagaaaaattgaagcaacaatttaggctcaatgtgcttaaaaaatgctatttttcctttcctatctgatattaacaacctgcggtatgcaataacttctacag
               || ||||   ||||||||| |||||||||||| |||||||| ||||||||||| ||||||||| |||| | | |||||     |     |  |      |||  |   ||||    || || ||| || |||    |  |  |  ||||  |   |     || ||   || |||  || | | |                                                                                  
------------GGGGAAGAGACGGCAGAAGAGGTGCCTGAAATTACTCACAGAGTGTTCTTGGATATCGATATTGATGAACAACATATAGgt-acagattcacacctaatagcattgaataaattgtg--cagtt-aataaacttgttgaagaaggtttttttcctctgattttcatata---aacttg--gccatagt----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213599098|gb|DB958359.1|DB958359
EST:     AATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagg ... acttctacagGTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGG
EST: gi|213605371|gb|DB966920.1|DB966920
EST:     AATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagg ... acttctacagGTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGG
EST: gi|151409297|gb|EV279105.1|EV279105
EST:     AATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagg ... acttctacagGTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGG
EST: gi|19452388|gb|BM953798.1|BM953798
EST:     AATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagg ... acttctacagGTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGG
EST: gi|9563823|gb|BE473332.1|BE473332
EST:     AATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagg ... acttctacagGTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGG
EST: gi|213617322|gb|DB965193.1|DB965193
EST:     AATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagg ... acttctacagGTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGG