1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTCGACAATTCCAAAGTCTTAGCAACCTGCAGCCGCTACAACTAAAAAAGCCCTTTGCTTTCTTTTCCACTCCTCACATTGGCTCTTTTATCACTATCAGgtaacccccaccttccccttctcccttttatgtcctctacttgttcaattactggactttcgtgccaacatgtttgtggggttttagtgggaaatgtaga...
species | Glycine max |
transcript | GLYMA12G03060.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCCTTTGCTTTCTTTTCCACTCCTCACATTGGCTCTTTTATCACTATCAG ATTTAGGGTCCCTTCTGCCATACTGCACACGTTGAAGATGGCAGCAACATCEST: gi|192324252|gb|FK018223.1|FK018223
genomic: CCCTTTGCTTTCTTTTCCACTCCTCACATTGGCTCTTTTATCACTATCAGgtaaccccca ... ccttatgtagATTTAGGGTCCCTTCTGCCATACTGCACACGTTGAAGATGGCAGCAACATC
EST: CCCTTTGCTTTCTTTTCCACTCCTCGCATTGGCTCTTTTATCACTATCAG ATTTAGGGTCCCTTCTGCCATACTGCACACGTTGAAGATGGCAGCAACATC
genomic: CCCTTTGCTTTCTTTTCCACTCCTCACATTGGCTCTTTTATCACTATCAGgtaaccccca ... ccttatgtagATTTAGGGTCCCTTCTGCCATACTGCACACGTTGAAGATGGCAGCAACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGACAATTCCAAAGTCTTAGCAACCTGCAGCCGCTACAACTAAAAAAGCCCTTTGCTTTCTTTTCCACTCCTCACATTGGCTCTTTTATCACTATCAGgtaacccccaccttccccttctcccttttatgtcctctacttgttcaattactggactttcgtgccaacatgtttgtggggttttagtgggaaatgtaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggggt