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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGGTTTGCTAAGCTGCTTCTGGGAGAGGACATGTCTGGAGGCGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACTAATCTCTCTGgttagtgactctcttatgtgctaattaagtaattagtttgcacaacgttgtagatacatttgaccataaccacttgtaaaacaacaataataagatgtta...

Basic information

species Glycine max
transcript GLYMA12G02620.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G02620.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G38430.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGAGGTTTGCTAAGCTGCTTCTGGGAGAGGACATGTCTGGAGGCGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACTAATCTCTCTGgt----tagtgactctcttatgtgctaattaagtaat-tagtttgcacaacgttgtagatacatttgaccataaccacttgtaaaacaacaataataagatgtta
||||| ||||||||||| ||||| || || ||||||||||| || || |||||||| ||||| || ||||| |||||||| || || || ||||||||||||    |    |   ||||   |  |  |||  |  | ||  | | |     || ||| |   ||| |  |   | | |    | |||                 
GAGAGATTTGCTAAGCTACTTCTCGGGGAAGACATGTCTGGTGGAGGTAAAGGGGTTTGTACGGCGCTTGCTATCTCCAACGCCATCACCAATCTCTCTGgtaccatctcaatcttcttccctttttgttagttggtatatatagtaggggtttctagtt---ttttaataaggctagtgtccacacag----------------

upper sequence: GLYMA12G02620.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g03620.t01 (Vitis vinifera), 5'ss of exon 3
GAGAGGTTTGCTAAGCTGCTTCTGGGAGAGGACATGTCTGGAGGCGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACTAATCTCTCTGgttagt-----gactctcttatgtgctaattaagtaattagtttgcacaacgttgtagatacatttgaccataaccacttgtaaaacaacaataataagatgtta--
||||| ||||||||||| || || || || || ||||||||||| || |||||||| |||||||| ||||| ||||| || || || || ||||||||||||||||     | |||| |    | || ||   ||   | |||      |   || ||  | |   |   | ||| |  |||       || |  |  | |      
GAGAGATTTGCTAAGCTTCTACTTGGGGAAGATATGTCTGGAGGAGGGAAAGGGGTTTGTACTGCCCTTGCCATCTCAAACGCCATCACAAATCTCTCTGgttagtttgcagtctctttctgttacttatcctgtgtatggttcctgagaaaatggaggaaaa---ggaaagaactagatgt----tttcagtgttgtgtttcctgt

upper sequence: GLYMA12G02620.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ30813 (Selaginella moellendorffii), 5'ss of exon 1
GAGAGGTTTGCTAAGCTGCTTCTGGGAGAGGACATGTCTGGAGGCGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACTAATCTCTCTGgttagtgactctcttatgtgctaattaagtaattagtttgcacaacgttgtagatacatttgaccataaccacttgtaaaacaacaataataagatgtta
|||||||| || |   |  | ||||| ||||| |||||||||||| | ||||| ||||| |||||||| || ||||| ||||| || || || || ||||||  ||| || |  | | |  |  ||   |  || || |||  |  ||  | |||  | | |   ||   |||                           
GAGAGGTTCGCGAGATTATTGCTGGGCGAGGATATGTCTGGAGGCAGTAAAGGTGTGTGCACTGCACTGGCGATCTCGAATGCCATCACGAACCTTTCTGgt--gtgtcttttcttttttttccttctttt-ttcgtatgcggagggtgattgattgagtgg--tattgtcacag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700670|gb|BW673027.1|BW673027
EST:     AGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACTAATCTCTCTG                         CAACCGTTTTTGGCGAACTGTGGAGGTTGGAGCCACTGGCGCCACAGAAGA
genomic: AGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACTAATCTCTCTGgttagtgact ... gtaattgcagCAACCGTTTTTGGCGAACTGTGGAGGTTGGAGCCACTGGCGCCACAGAAGA