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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGTGCCAACTGATAACTCGGTGGATATTCTCACGAATGATATTGGTGTTGTTGTTGTTATGGATGATGATGGGGAGCCTCAAGGGTTCAACATATATgtaagaataagatgggtgtagataacagtttgagtgaatttattttttttctaccattgttctaactgggaccttctaattattcttgcag

Basic information

species Glycine max
transcript GLYMA12G02200.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G02200.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G090338_T01 (Zea mays), 5'ss of exon 2
TACTGTGCCAACTGATAACTCGGTGGATATTCTCACGAATGATATTGGTGTTGTTGTTGTTATGGATGATGATGGGGAGCCTCAAGGGTTCAACATATATgtaaga---ataagatgggtgtagataacagtttgagtgaattta---ttttttttctaccattgttctaactgggaccttctaattat----tcttgcag
||| | | |   ||||||||| || |||||||| || ||||| || |||||||||||||||   |||||||  || || |||   || || ||||| |||||||||   || | |    |   ||      | ||  |     ||   || ||| |  |   || ||    ||   |  || | | ||     | || |||
TACCGCGGCTGGTGATAACTCTGTTGATATTCTGACCAATGACATCGGTGTTGTTGTTGTTTCAGATGATGCAGGAGAACCTATTGGCTTTAACATCTATgtaagacctatgaaaaacattctgaacctgctctgcctttgcataactttgtttgtacatgtttatttattctataatgtttttactaccctatttttcag

upper sequence: GLYMA12G02200.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g02330.t01 (Vitis vinifera), 5'ss of exon 2
TACTGTGCCAACTGATAACTCGGTGGATATTCTCACGAATGATATTGGTGTTGTTGTTGTTATGGATGATGATGGGGAGCCTCAAGGGTTCAACATATATgtaagaataagatgggtgtagataacagtttgagtgaatttattttttttctaccattgttctaactgggaccttctaattattcttgcag
|||||||||||| |||||||||||||||||| |||| |||||| |||||||||||||||||   |||| | |||| |||||||  || ||||| || ||||| |||  || ||         |||    || | |    |||||   |||     | | || ||| ||    ||  ||||| || ||||||
TACTGTGCCAACAGATAACTCGGTGGATATTTTCACAAATGATGTTGGTGTTGTTGTTGTTTCTGATGCTAATGGAGAGCCTCTGGGTTTCAATATCTATgtgagataaacattcactctactaa----tttacttttcttattccattttgg--agtcttataattg---tctgttaatttttgttgcag