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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATATTATGATTCCTTTGTTCGAGAGGCCTGTGATCTACGACGTACGTGCACGACCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaaaactttttgtttgtcctatttcttttcttattcttaagacctgatattgcagtatgcttgaatttgtggctgcaaggagtcaaacaggttattcat...

Basic information

species Glycine max
transcript GLYMA12G01850.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01850.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G20530.2 (Arabidopsis thaliana), 5'ss of exon 4
ACATATTATGATTCCTTTGTTCGAGAGGCCTGTGATCTACGACGTACGTGCACGACCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaaaactttttgtttgtcctatttcttttcttattcttaagacctgatattgcagtatgcttgaatttgtggctgcaaggagtcaaacag---gttattcat--------
 ||  |||||||||| | |||||| |||||  | ||||| ||||| ||||||   ||| || |||| ||||| ||||| ||||||||||||||||| ||||||   |  ||  |||   |  ||    | || ||   ||  | | | |  ||  || |  | |  |      |   |     | |    |   | |||| |         
TCACCTTATGATTCCATGGTTCGAAAGGCCAATCATCTATGACGTTCGTGCAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgcttcatttcatcacttctaatactaatgggtataatcaggtcgtgtggttttgtcgtgtgaactacatgataagcttatgttgtgtggtatttaaacattcag

upper sequence: GLYMA12G01850.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G28510.1 (Arabidopsis thaliana), 5'ss of exon 3
ACATATTATGATTCCTTTGTTCGAGAGGCCTGTGATCTACGACGTACGTGCACGACCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaaaac-tttttgtttgtcctatttc---ttttcttattcttaagacctgat-attgcagtatgcttgaatttgtggctgcaaggagtcaaacaggttattcat-------------
|||  |||||||||||| ||| || ||||| || ||||| ||||| ||||| |||||| |  | || ||||||||||| || ||||||||||| || ||||||      || |  |  ||| ||||    |  | || || |    |  |  | | ||     |  ||   ||         |||   | ||     || |   |             
ACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGTGCTCGACCTTACCTTGTTGAGAGTACATCCGGAAGCCGTGATCTTCAGATGgtactctgcttctactcctcccattttcagtcattttgttttgtgaatttagtgaatgtgaagtcgttcgcttcaacatcataagctcttaagttttttgtggttttaaaactttcag

upper sequence: GLYMA12G01850.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0048g02350.t01 (Vitis vinifera), 5'ss of exon 4
ACATATTATGATTCCTTTGTTCGAGAGGCCTGTGATCTACGACGTACGTGCACGACCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaaaactttttgtttgtcctatttcttttcttattcttaagacctgatattgcagtatgcttgaatttgtggctgcaaggagtcaaacaggttattcat-----
 ||  | ||||| || | ||| || ||||| || ||||| || || |||||||| |||||| | || |||||||| |||||||||||||| ||||| ||||||| | | |||  | || ||  |  | |    | | ||  |   | || |||| |      ||     |||  || |  ||| || |   |  | |        
TCACCTGATGATCCCATGGTTTGAAAGGCCAGTTATCTATGATGTCCGTGCACGCCCTCATCTGGTGGAGAGTACTTCAGGGAGCCGTGACCTCCAGATGgtaatattgttttctagttct--tgttatagaaaatgttgtgg--ttatgttgctgatcatgtgttcaggtga-tgaagtgagacatagctgcaactttcagact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6454694|gb|AW185377.1|AW185377
EST:     CACGACCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATG                         GTGAAAATTGGACTCAGAGTCCTTACGCGCCCTGTTCCTGACCAGTTACCG
genomic: CACGACCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaaaacttt ... tttggtgtagGTGAAAATTGGACTCAGAGTCCTTACGCGCCCTGTTCCTGACCAGTTACCG
EST: gi|58017778|gb|CX704520.1|CX704520
EST:     TTTAGTAGAGAGTCCATCAGGGAGCCGTGATCTCCAAATG                         GTGAAAATTGGACTCAGAGTCCTTACGCGCCCTGTTCCTGACCAGTTACCG
genomic: TTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaaaacttt ... tttggtgtagGTGAAAATTGGACTCAGAGTCCTTACGCGCCCTGTTCCTGACCAGTTACCG