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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAAGAAATTTGGAGCAACCAGTGTAGGCATCACTCTGAGTCCTGTTCAAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcatttctcgacatgtttttagtatttatatttacgcattccaaggttctttataacttctatagaatctatgcatataatactatataaatatacaagtataataatatttgctttcatgtttctgtaattgcag

Basic information

species Glycine max
transcript GLYMA12G01690.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285433|gb|BI469324.1|BI469324
EST:     AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAG                         GTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
EST: gi|20498613|gb|BQ273543.1|BQ273543
EST:     AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAG                         GTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
EST: gi|21994774|gb|BQ786302.1|BQ786302
EST:     GCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAG                         GTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
genomic: GCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
EST: gi|57574459|gb|CX547434.1|CX547434
EST:     AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATGGGCTGAT-AG                         GTTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCA
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagG-TTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCA
EST: gi|20814819|gb|BQ299297.1|BQ299297
EST:     AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAG                         GTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
EST: gi|15285390|gb|BI469281.1|BI469281
EST:     AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAG                         GTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGC
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGC
EST: gi|18733793|gb|BM527813.1|BM527813
EST:     AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAG                         GTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
EST: gi|151394148|gb|EV264019.1|EV264019
EST:     AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAG                         GTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
EST: gi|9204856|gb|BE331080.1|BE331080
EST:     AAGCTCATAGAGCACATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAT                         GTTTCCTTTCATGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
EST: gi|23732822|gb|BU764585.1|BU764585
EST:     AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAG                         GTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
EST: gi|20498372|gb|BQ273302.1|BQ273302
EST:     AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAG                         GTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
EST: gi|120494419|gb|EH222586.1|EH222586
EST:     AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAG                         GTTTCCGTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
EST: gi|254344754|gb|GR855518.1|GR855518
EST:     AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAG                         GTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
EST: gi|15000769|gb|BI321583.1|BI321583
EST:     AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAG                         GTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
EST: gi|120495732|gb|EH223899.1|EH223899
EST:     AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAG                         GTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcattt ... gtaattgcagGTTTCCTTTCAGGTTGCTGACGCTCTACAGCAACCATTCTCTGACGGCCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCAAGAAATTTGGAGCAACCAGTGTAGGCATCACTCTGAGTCCTGTTCAAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGCTGATAAGgtcttcatttctcgacatgtttttagtatttatatttacgcattccaaggttctttataacttctatagaatctatgcatataatactatataaatatacaagtataataatatttgctttcatgtttctgtaattgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT