1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGCCAAGAAATTTGGAGCAACCAGCGTAGGCATTACTCTGAGTCCTGTTCAAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAGgtgttctttttctcgacatgtttttcatttctagtactagtatttaggaattttttcattactaattataagatgttttcaattaatttatgttttttaa...
species | Glycine max |
transcript | GLYMA12G01680.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAG GTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAAEST: gi|213602117|gb|DB962610.1|DB962610
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAGgtgttctttt ... gtaattgcagGTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAA
EST: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAG GTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAAEST: gi|151406224|gb|EV276039.1|EV276039
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAGgtgttctttt ... gtaattgcagGTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAA
EST: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAG GTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAAEST: gi|58023365|gb|CX710106.1|CX710106
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAGgtgttctttt ... gtaattgcagGTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAA
EST: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAG GTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAAEST: gi|57575258|gb|CX548233.1|CX548233
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAGgtgttctttt ... gtaattgcagGTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAA
EST: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAG GTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAAEST: gi|14125812|gb|BG790250.1|BG790250
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAGgtgttctttt ... gtaattgcagGTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAA
EST: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAG GTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAAEST: gi|13482030|gb|BG511373.1|BG511373
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAGgtgttctttt ... gtaattgcagGTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAA
EST: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAG GTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAAEST: gi|26056288|gb|CA799202.1|CA799202
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAGgtgttctttt ... gtaattgcagGTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAA
EST: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAG GTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAAEST: gi|192319801|gb|FK013801.1|FK013801
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAGgtgttctttt ... gtaattgcagGTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAA
EST: AAGCTCAAAGAGCAAATGCTCT-GCTGCTGCTCAAGGATTGGATGATAAG GTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAA
genomic: AAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAGgtgttctttt ... gtaattgcagGTTTCCTTTGAGGTTGCTGACGCTCTAAAGCAACCATTCCCGGATGGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCAAGAAATTTGGAGCAACCAGCGTAGGCATTACTCTGAGTCCTGTTCAAGCTCAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTGGATGATAAGgtgttctttttctcgacatgtttttcatttctagtactagtatttaggaattttttcattactaattataagatgttttcaattaatttatgttttttaa
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT