1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTGGTGCTTTGTTGAGTACTCTATCCATTCGCCTTGGTTACAAGTTGAAGCAGGCACTTGACTCGAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAGgtccttatgtacttttggggggacaccattctcccccttctgtgtttcccctcccttgttattatttttttttatcctaagtgggaaaataaacttaacttaaaaaggtatagtgccttggtctatagtggattcttacttcatattgtttgttactacag
species | Glycine max |
transcript | GLYMA12G01670.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAGGCACTTGACTCGAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAG GAAATGGAAAATCCACCAACACAAAAAACTCCGCAGACTGCTTTATGCAGTEST: gi|151400637|gb|EV270451.1|EV270451
genomic: GCAGGCACTTGACTCGAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAGgtccttatgt ... gttactacagGAAATGGAAAATCCACCAACACAAAAAACTCCGCAGACTGCTTTATGCAGT
EST: GCAGGCACTTGACTCGAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAG GAAATGGAAAATCCACCAACACAAAAAACTCCGCAGACTGCTTTATGCAGTEST: gi|298174118|gb|HO017454.1|HO017454
genomic: GCAGGCACTTGACTCGAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAGgtccttatgt ... gttactacagGAAATGGAAAATCCACCAACACAAAAAACTCCGCAGACTGCTTTATGCAGT
EST: GCAGGCACTTGACTCGAAGCCGAAGCAAAATGCAACTACTGG--A-AA-- ----TGGAAAATCCACCAACACAAAAAACTCCGCAGACTGCTTTATGCAGTEST: gi|7926273|gb|AW832299.1|AW832299
genomic: GCAGGCACTTGACTCGAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAGgtccttatgt ... gttactacagGAAATGGAAAATCCACCAACACAAAAAACTCCGCAGACTGCTTTATGCAGT
EST: GCAGGCACTTGACTCGAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAG GAAATGGAAAATCCACCAACACAAAAAACTCCGCAGACTGCTTTATGCAGT
genomic: GCAGGCACTTGACTCGAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAGgtccttatgt ... gttactacagGAAATGGAAAATCCACCAACACAAAAAACTCCGCAGACTGCTTTATGCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGTGCTTTGTTGAGTACTCTATCCATTCGCCTTGGTTACAAGTTGAAGCAGGCACTTGACTCGAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAGgtccttatgtacttttggggggacaccattctcccccttctgtgtttcccctcccttgttattatttttttttatcctaagtgggaaaataaacttaacttaaaaaggtatagtgccttggtctatagtggattcttacttcatattgtttgttactacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA