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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaagatctgagtatgcctttacatcatgcgtgttctttgtttttcctctcataaaagcaaccagtaagatctgagaatgtcctgtttcatggtcatgctgatttttggagttgcttcatacttaacag

Basic information

species Glycine max
transcript GLYMA12G00830.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00830.3 (Glycine max), 5'ss of exon 2
lower sequence: AT5G61500.1 (Arabidopsis thaliana), 5'ss of exon 2
GGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaagatct---gagtatgcctttacatcatgcgtgttctttgtttttcctctcataaaagcaaccagtaagatctgagaatgtcctgtttcatggtcatgctgatttttggagttgcttcatacttaacag
|||||| |||||  || |||| |||||||||||||||||  | || |||||||| |||||||||||||||||||   |  | ||||    ||  |   | |      |  ||  |  |  ||   | |    |    | |     || |   ||| |                                                    
GGAATCTGGTGACGCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAACAGTTTTTGATTACTAGAAATGgtaaatttgaaatctttaaagcttatttctgttggctttgtagttctgattgcacattatgttgtgg-actttttacgggttgacag---------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298192494|gb|HO036576.1|HO036576
EST:     GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG                         TGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
genomic: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaa ... tacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
EST: gi|192330860|gb|FK021619.1|FK021619
EST:     GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG                         TGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
genomic: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaa ... tacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
EST: gi|192306687|gb|FG998085.1|FG998085
EST:     GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG                         TGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
genomic: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaa ... tacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
EST: gi|213591644|gb|DB969744.1|DB969744
EST:     GAGGAAGCCATACTTGCCGCCTGAGAAACAGTTCTTGATTACTAGAAATG                         TGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
genomic: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaa ... tacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
EST: gi|192324977|gb|FK016133.1|FK016133
EST:     GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG                         TGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
genomic: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaa ... tacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
EST: gi|7684723|gb|AW755371.1|AW755371
EST:     GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG                         TGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
genomic: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaa ... tacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
EST: gi|298169552|gb|HO020912.1|HO020912
EST:     GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG                         TGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
genomic: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaa ... tacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
EST: gi|298186631|gb|HO037264.1|HO037264
EST:     GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG                         TGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
genomic: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaa ... tacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
EST: gi|151404711|gb|EV274525.1|EV274525
EST:     GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG                         TGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
genomic: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaa ... tacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG