Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACTAGACCTGCATAATGCAGGCTACCTTGCACAGAAACGCCTTGCTCGTGGTTTAAGGCTCAATTATGTTGAAACTGTGGCTCTCATAGCAACACAGgtttgtttttgttcctttctgttataaatttccaaactttgtttttcttcttctttcttttccttattataatatcggttatctgttaagtagtccaatggcaattgcatacagaacccaagttttaatcctttgtggaaattaatttaatttgtatgtatgttattatttattctgttgcatag

Basic information

species Glycine max
transcript GLYMA11G37250.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 1
GAAACTAGACCTGCATAATGCAGGCTACCTTGCACAGAAACGCCTTGCTCGTGGTTTAAGGCTCAATTATGTTGAAACTGTGGCTCTCATAGCAACACAGgtttgtttttgttcctttctgttataaatttccaaactttgtttttcttcttctttcttttccttattataatatcggttatctgttaagtagtccaatggcaattgcatacagaacccaagttttaatcctttgtggaaattaatttaatttgtatgtatgttattatttattctgttgcatag
|||  |||| || ||| | || || | ||||||||||||||| |||||||||||| | || ||||||||   |||| |||| || || || || || |||||   |   | ||| |   | | ||  | |     | |||  |  ||| |   | |    ||    ||||  |        |||  |  ||  |  |                                                                                        
GAAGTTAGAGCTACATCAAGCTGGTTTCCTTGCACAGAAACGTCTTGCTCGTGGTATTAGACTCAATTACACTGAAGCTGTAGCACTTATTGCTACTCAGgtacttcactattcttcaatttcatttact-----atttttatggtctgcaattcttaagtcgaagttatggttctcaacttctcatg-gttatgtag---------------------------------------------------------------------------------------