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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacgcttttctttatgttcttgttttttttactttctgatttttatgcatacttccaacattgttgttgatacttgaaattattgtgcgcgcta...

Basic information

species Glycine max
transcript GLYMA11G36990.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316561|gb|GR828098.1|GR828098
EST:     GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: gi|193390296|gb|FK354928.1|FK354928
EST:     GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: gi|9899202|gb|BE608100.1|BE608100
EST:     GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: gi|298190731|gb|HO032852.1|HO032852
EST:     GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: gi|193409709|gb|FK375015.1|FK375015
EST:     GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: gi|192328242|gb|FK020461.1|FK020461
EST:     GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: gi|254331208|gb|GR845787.1|GR845787
EST:     GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: gi|13312501|gb|BG406152.1|BG406152
EST:     GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: gi|192328139|gb|FK022848.1|FK022848
EST:     GTTGATAACAGAAATTCCTCAACCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT