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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTTTATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGgtaaggatatattttattctttgatggttccctgactgttgtagttactgaataaacttcattccatgcag

Basic information

species Glycine max
transcript GLYMA11G35600.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35600.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G40290.3 (Arabidopsis thaliana), 5'ss of exon 2
GAACTTTATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGgtaaggatatatt---tt----attctttg-atggttccctgactgttgtagttactgaata-aacttcattccatgcag
||  | ||| |  ||||||| ||||||||||||||   | |||||||||||||||||||||| || |  |   ||    |||| |||  |   ||  ||  | || |||||     ||| || ||  ||   | |||
GACTTGTATGTGAACATTGGTTGGCCTTTGTATCGACGACATGGTCATGCTTTTGAGgtaagaattttgtgaattggagattcattgtgtatctctatggttatt-tagttctcatatataattttcttttgttcag

upper sequence: GLYMA11G35600.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0067g01710.t01 (Vitis vinifera), 5'ss of exon 2
GAACTTTATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGgtaaggatatattttattct-ttgatggttccctgactgttgtagttactgaataaacttcattccatgcag---------------------------------------------------------------------------
||  | || || ||| | ||||||||||| || || ||||||||||||||||||||||| ||  ||| | | | | | |||  ||||   | | |||| |  ||  ||      |          |  |                                                                           
GATTTATACATCCACGTCGGATGGCCTTTATACCGAAAATATGGTCATGCTTTTGAGgtgagattatttatcactttattggaggttttttta-tgtttttttttttgtgggggcggggggatgggtgggggtcctttcttttctttttctcttgtatttacagctaagaaccttttttcctttttaccttttggttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6070400|gb|AW099787.1|AW099787
EST:     ATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAG                         GCTCTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTC
genomic: ATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGgtaaggatat ... ttccatgcagGCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTC
EST: gi|193623725|gb|FK575537.1|FK575537
EST:     ATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAG                         GCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTC
genomic: ATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGgtaaggatat ... ttccatgcagGCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTC
EST: gi|208137298|gb|GD934602.1|GD934602
EST:     AATATGGTCATGCTTTTGAG                         GCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTCACT
genomic: AATATGGTCATGCTTTTGAGgtaaggatat ... ttccatgcagGCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTCACT
EST: gi|151396190|gb|EV266067.1|EV266067
EST:     ATATTCACATTGGATGGTCTTTGTATCGCAAATATGGTCATGCTTTTGAG                         GCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTCACT
genomic: ATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGgtaaggatat ... ttccatgcagGCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTCACT
EST: gi|7284298|gb|AW596892.1|AW596892
EST:     ATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAG                         GCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTC
genomic: ATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGgtaaggatat ... ttccatgcagGCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTC
EST: gi|298190105|gb|HO032226.1|HO032226
EST:     ATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAG                         GCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTCACT
genomic: ATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGgtaaggatat ... ttccatgcagGCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTCACT
EST: gi|254323854|gb|GR840387.1|GR840387
EST:     ATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAG                         GCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTCACT
genomic: ATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGgtaaggatat ... ttccatgcagGCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTCACT
EST: gi|192306825|gb|FK002995.1|FK002995
EST:     ATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAG                         GCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTCACT
genomic: ATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGgtaaggatat ... ttccatgcagGCTTTCAAAATAATTGTGACTGATCCTGATACTGTTTTAAGTACTCTCACT