1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacattacactctcttcttcttcttcttcttcttcttcttcttccctctgttcacagtttttaggctcgtttatgtttttcattgatgaatatagggtttacttctatgtgtggtgtttgttgtgtag
species | Glycine max |
transcript | GLYMA11G35450.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCTGCGAGATCTTGAGTCGCCGATTAGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|192305923|gb|FG995795.1|FG995795
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: TTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|58017635|gb|CX704377.1|CX704377
genomic: TTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CGCTTGAGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGATTCATGGCCGAEST: gi|151398425|gb|EV268296.1|EV268296
genomic: CGCTTGAGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|192305924|gb|FG995796.1|FG995796
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGA-TTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|192307782|gb|FG999261.1|FG999261
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|151400505|gb|EV270319.1|EV270319
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|58014260|gb|CX701002.1|CX701002
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: TGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGATTCATGGCCGAEST: gi|308099186|gb|HO761027.1|HO761027
genomic: TGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: GCTTGAGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|24136884|gb|BU927394.1|BU927394
genomic: GCTTGAGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|151393924|gb|EV263795.1|EV263795
genomic: CGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|9901912|gb|BE610880.1|BE610880
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: GCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|15000729|gb|BI321543.1|BI321543
genomic: GCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: GCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|298185503|gb|HO030716.1|HO030716
genomic: GCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|298190383|gb|HO032504.1|HO032504
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGTGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|17400125|gb|BM176907.1|BM176907
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: TGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|209723425|gb|BW651353.1|BW651353
genomic: TGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTAGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|27423697|gb|CA935217.1|CA935217
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: GAGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|298163950|gb|HO013595.1|HO013595
genomic: GAGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|298188041|gb|HO031998.1|HO031998
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: GCTTGAGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|16996638|gb|BM086010.1|BM086010
genomic: GCTTGAGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: TCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|298180009|gb|HO025224.1|HO025224
genomic: TCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|298165591|gb|HO011640.1|HO011640
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|192296219|gb|FG989760.1|FG989760
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGGTCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGTCGAEST: gi|7284321|gb|AW596915.1|AW596915
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: TTGAGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|15287229|gb|BI471120.1|BI471120
genomic: TTGAGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: AGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|23725677|gb|BU760801.1|BU760801
genomic: AGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: AGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|12496698|gb|BG047195.1|BG047195
genomic: AGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: TTGAGCTCTGGGAGATCGTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAAAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|6746905|gb|AW317361.1|AW317361
genomic: TTGAGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: GCTTGAGCTCTGCGATATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|209699176|gb|BW664353.1|BW664353
genomic: GCTTGAGCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTAGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|213619878|gb|DB971137.1|DB971137
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTAGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|6566570|gb|AW234213.1|AW234213
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: GAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|209701422|gb|BW667323.1|BW667323
genomic: GAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTAGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|16348580|gb|BI974175.1|BI974175
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: TCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|298177490|gb|HO023623.1|HO023623
genomic: TCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|17023216|gb|BM094250.1|BM094250
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGAEST: gi|207801492|gb|GD773870.1|GD773870
genomic: CTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
EST: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG TAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
genomic: CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacat ... tgttgtgtagTAAGCTTCAGAGTGATGCTTTGCGTGAAGCCATCTCAGGAATCATGGCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAGgtgcttacattacactctcttcttcttcttcttcttcttcttcttcttccctctgttcacagtttttaggctcgtttatgtttttcattgatgaatatagggtttacttctatgtgtggtgtttgttgtgtag
- - - GAGATC
- - - - - - - - - - - - - - - AAGATG