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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGACTTGGTGCTGAGATTGTTGGCACTTTCATTCTTGTCTACACCGTTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgcatgccctcttctcttgtctcataatatataattaacatgcatgcaaaaaattacttaaatagatacatgtatgattcatggaactgaatgaatcaatgaatcaatgaatcaaatgatcag

Basic information

species Glycine max
transcript GLYMA11G35030.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g44630.2 (Oryza sativa), 5'ss of exon 3
TGATGGACTTGGTGCTGAGATTGTTGGCACTTTCATTCTTGTCTACACCGTTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgcatgccctcttctcttgtctcataatatataattaacatgcatgcaaaaaattacttaaatagatacatgtatgattcatggaactgaatgaatcaatgaatcaatgaatcaaatgatcag
||| || ||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||||| ||||||||| | |  || || |||||||| || |||||| ||  || |       | |||     | |||| | |         | |   |  | || |||    | |  |   |||| | ||| | |||    ||  |||  ||||   |             
TGACGGTCTTGGTGCTGAGATTGTTGGCACCTTCATCCTGGTCTACACCGTCTTCTCAGCCACTGATGCCAAGAGGAATGCCAGGGACTCACATGTTCCTgtaagt--atccttctcctttttgcagtgtgatatgtga---------aagttcagtagtagttagtgtggtcta---atgagttatgca-ctgtgataactaattcatcaccaa-------------

upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os04g47220.1 (Oryza sativa), 5'ss of exon 1
TGATGGACTTGGTGCTGAGATTGTTGGCACTTTCATTCTTGTCTACACCGTTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgcatgccctcttctcttgtctcataatatataattaacatgcatgcaaaaaattacttaaatagatacatgtatgattcatggaactgaatgaatcaatgaatcaatgaatcaaatgatcag
 || || || || || ||||| || ||||| ||||| || ||||||||||| ||||| |||||||| |||||| | | ||| || ||||| ||||| || ||  ||  || ||  || ||  ||    | |   |   |     | | ||    |   ||   | | | |||  || | || || |     |   ||    ||  |                      
CGACGGCCTCGGCGCCGAGATCGTCGGCACCTTCATCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGGAACGCCAGGGACTCCCACGTTCCGgttagt--ataccaactactactgcagtaaagattcagagatggaagtatttttactgttttctgagt-gattgatttttgttttaatttgcgcgatcttccacag----------------------

upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 2
lower sequence: AC209208.3_FGT002 (Zea mays), 5'ss of exon 2
TGATGGACTTGGTGCTGAGATTGTTGGCACTTTCATTCTTGTCTACACCGTTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgcatgccctcttctcttgtctcataatatataattaacatg--catgcaaaaaattacttaaatagatacatgtatgattcatggaactgaatgaatcaatgaatcaatgaatcaaatgatcag
|||||| ||||| ||||||||||||||||| ||||| || ||||||||||| ||||| ||||||||||||||| | |  || || ||||| || || |||||| || |    || |||| ||| ||  |   | |  | ||   ||     |||    | |   ||   |    |||  |||     ||| || ||||| ||                            
TGATGGCCTTGGCGCTGAGATTGTTGGCACCTTCATCCTAGTCTACACCGTCTTCTCAGCCACCGATGCCAAGAGGAATGCCAGGGACTCCCATGTTCCTgtaagtactcttccacttcccttttcctagtttgttcagttgttatagttctgcttggattagtttggcttagcacacatat-----atgtaattgaatcaactt-------------------------

upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G392975_T03 (Zea mays), 5'ss of exon 2
TGATGGACTTGGTGCTGAGATTGTTGGCACTTTCATTCTTGTCTACACCGTTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgcatgccctcttctcttgtctcataatatataattaacatgcatgcaaaaaattacttaaatagatacatgtatgattcatggaactgaatga-atcaatgaatcaatgaatcaaatgatcag
 || || ||||| || ||||| |||||||| ||||| || ||||||||||| ||||| ||||||||||||||| | | ||| || ||||| || ||||| ||| || |    | || | || | | || || | | |  | | | ||     |      | ||| |||  | |  || || ||  |    |    ||||      | |                     
GGACGGCCTTGGCGCAGAGATCGTTGGCACCTTCATCCTAGTCTACACCGTCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactcttcgtcctttcgt-tttcctagtttgt--tcagc-tgt---tagggttctgcttgaattcacatttgcat-atctaaaatataagatgacggttgtaa---------------------

upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G174807_T01 (Zea mays), 5'ss of exon 2
TGATGGACTTGGTGCTGAGATTGTTGGCACTTTCATTCTTGTCTACACCGTTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgca-tgccctcttctcttgtctcataatatataattaacatgcatgcaaaaaattacttaaatagatacatgtatgattcatggaactgaatgaatcaatgaatcaatgaatcaaatgatcag
 || || || || || ||||| || ||||| ||||| || ||||||||||| ||||| |||||||| |||||| | | ||| || ||||| || || || ||  || || |  |  | |  | |  ||  | ||          | | | |||||         |  |   ||  |||  |  ||  ||||   |||||||                            
CGACGGCCTAGGCGCCGAGATCGTCGGCACCTTCATCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGGAACGCCAGGGACTCCCATGTGCCGgtgagtacagtatcagccttgccttcctgcttattcgcctcgtccgtccgtgcaag-------ctcgacttatcgatggtttctttgtgga--cgaatgaacag-------------------------

upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ18960 (Selaginella moellendorffii), 5'ss of exon 2
TGATGGACTTGGTGCTGAGATTGTTGGCACTTTCATTCTTGTCTACACCGTTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgcatgccctcttctcttgtctcataatatataattaacatgcatgcaaaaaattact-taaatagatacatgtatgatt--catggaactgaatgaatcaatgaatcaatgaatcaaatgatcag----------------------------------------------------------------
 ||||| ||||| |||||||||||||| || ||| |||| |||||||| || ||||| ||||| ||||||||| | || || |||||||| || ||||| ||| ||   | |   | ||    |  |      ||     |  |||| |         ||  | |   ||  | | ||| || ||  | | |   |   ||    | |   ||      ||   | |||                                                                  
AGATGGTCTTGGAGCTGAGATTGTTGGTACCTTCGTTCTCGTCTACACGGTCTTCTCCGCCACTGATGCCAAGAGAAGTGCCAGAGACTCCCATGTCCCGgtacgtttcttcttccatccaaagctttggttgattcccctctcatgaagttttgcttttcttcttcttatcttcttgtgtggttttcctagtttttcttgctgtacttcctcttatcttctccttatctcttctcctcctcatggatagatttaagatatgttccaagctcacaaactttggcgatttctacag

upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ11572 (Selaginella moellendorffii), 5'ss of exon 2
TGATGGACTTGGTGCTGAGATTGTTGGCACTTTCATTCTTGTCTACACCGTTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgcatgccctcttctcttgtctca--taatatataattaacatgcatgcaaaaaattact-taaatagatacatgtatgatt--catggaactgaatgaatcaatgaatcaatgaatcaaatgatcag----------------------------------------------------------------
 ||||| ||||| |||||||||||||| || ||| |||| ||||||||||| ||||| ||||| ||||||||| | || || |||||||| || ||||| ||| ||   | |   | ||    |  |    | ||       |  |||| |     |   ||  | |   ||  | | ||| || ||  | | |   |   ||    | |   ||      ||   | |||                                                                  
AGATGGTCTTGGAGCTGAGATTGTTGGTACCTTCGTTCTCGTCTACACCGTCTTCTCCGCCACTGATGCCAAGAGAAGTGCCAGAGACTCCCATGTCCCGgtacgtttctccttccatccaaagctttggttgattcccccctctcatgaagttttacttttcttcttcttatcttcttgtgtggttttcctagtttttcttgctgtacttcctcttatcttctccttatctcttctcctcctcatggatagatttaagatatgttccaagctcacaaactttggcgatttctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315524|gb|GR825333.1|GR825333
EST:     TTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCT                         ATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCC
genomic: TTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgcat ... aaatgatcagATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCC
EST: gi|209703049|gb|BW656082.1|BW656082
EST:     TTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCT                         ATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCC
genomic: TTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgcat ... aaatgatcagATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCC
EST: gi|9898746|gb|BE607714.1|BE607714
EST:     TTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCT                         ATTGTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCC
genomic: TTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgcat ... aaatgatcagATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCC
EST: gi|4313534|gb|AI460653.1|AI460653
EST:     TTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCT                         ATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCC
genomic: TTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgcat ... aaatgatcagATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCC
EST: gi|151407326|gb|EV277141.1|EV277141
EST:     TTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCT                         ATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCC
genomic: TTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgcat ... aaatgatcagATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCC
EST: gi|7588404|gb|AW704200.1|AW704200
EST:     TTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCT                         ATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCC
genomic: TTTTCTCTGCCACCGATGCCAAGCGTAGCGCTAGAGACTCACACGTCCCTgtatgtgcat ... aaatgatcagATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCC