1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCCCTTTGAAGAAGATGACAAGGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtaggaaaatttttccttttcttgtatgtctgtttcaattgaatatgcctgatctaattgaacattttttttttttggtttacag
species | Glycine max |
transcript | GLYMA11G34980.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|254323156|gb|GR835764.1|GR835764
genomic: TTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|193452589|gb|FK418015.1|FK418015
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: AAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|6071648|gb|AW101035.1|AW101035
genomic: AAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|193363769|gb|FK330485.1|FK330485
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|193347090|gb|FK310960.1|FK310960
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TTCCATGTTTAAAAGAATAAATAGA CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAEST: gi|193347090|gb|FK310960.1|FK310960
genomic: TTCCATGTTTAAAAGAATAAAT-G-gtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAA
EST: TTCCATGTTTAAAAGAATAAATAGA CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAEST: gi|58016090|gb|CX702832.1|CX702832
genomic: TTCCATGTTTAAAAGAATAAAT-G-gtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAA
EST: TTTCCATGTTT-AAAG-ATAAAATG CAANGGAGCATG-TGTGGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAEST: gi|193497923|gb|FK462499.1|FK462499
genomic: TTTCCATGTTTAAAAGAAT-AAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGT-GGGGTGGTATAGCACTGGTCCAAAGCTGCGCGA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|207781762|gb|GD754439.1|GD754439
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|193732371|gb|FK668361.1|FK668361
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|193408977|gb|FK371609.1|FK371609
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATG-TTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|208317923|gb|GE116676.1|GE116676
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|208269553|gb|GE070351.1|GE070351
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|193350354|gb|FK317442.1|FK317442
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|193302125|gb|FK266960.1|FK266960
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TTAAAAGAAT-AATG AEST: gi|193302125|gb|FK266960.1|FK266960
genomic: TTAAAAGAATAAATGgtacgagtag ... tggtttacag-
EST: TTAAAAGAAT-AATG AEST: gi|6718815|gb|AW306462.1|AW306462
genomic: TTAAAAGAATAAATGgtacgagtag ... tggtttacag-
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAGTAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAACEST: gi|208079786|gb|GD873748.1|GD873748
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|193358044|gb|FK319672.1|FK319672
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: GACCACAATTACCATGAATCTATGTTTTCCATGTTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|58017218|gb|CX703960.1|CX703960
genomic: GACCACAATTACCATGAATCTATGTTTTCCATG-TTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: GACCACAATTACCATGAATCTATGTTTCCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|193702807|gb|FK639197.1|FK639197
genomic: GACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCAATAGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAEST: gi|208165655|gb|GD959443.1|GD959443
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGC-AT-GTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGA
EST: GTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|24136280|gb|BU926790.1|BU926790
genomic: GTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|208205725|gb|GE006136.1|GE006136
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|207840530|gb|GD812655.1|GD812655
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTACGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|207811079|gb|GD783000.1|GD783000
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|193429218|gb|FK398016.1|FK398016
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATG-TTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGTAAEST: gi|193645638|gb|FK588282.1|FK588282
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCG-AA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|193532136|gb|FK489338.1|FK489338
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCACGAATCTATGTTT-CCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|298172443|gb|HO019483.1|HO019483
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|208333750|gb|GE132031.1|GE132031
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|207824956|gb|GD797172.1|GD797172
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAEST: gi|151411180|gb|EV280991.1|EV280991
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
EST: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG CAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
genomic: TGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtag ... tggtttacagCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCCTTTGAAGAAGATGACAAGGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGgtacgagtaggaaaatttttccttttcttgtatgtctgtttcaattgaatatgcctgatctaattgaacattttttttttttggtttacag
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