1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTAAAGCTTCAGATCACAACAGATCCACCATTCACCTCACCACTTTCTCTTCACAAGgtatgctgaaaatgaaatacccactttgactgtgttaactttatactatttcatttctctgaccaaaacagattcattttgtacgaggatttttttttctttcaagctttcaaagtttaaccctttttcaagctcattgttgtttttatgtttttggttcatatgagtagctcaagttattgtgacag
species | Glycine max |
transcript | GLYMA11G34830.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCAGATCACAACAGATCCACCATTCACCTCACCACTTTCTCTTCACAAG GCAAATCTAACAAGAAAAAGTAGTCTCTGAAGCCGATCCAGTGTCTTGTGAEST: gi|17963599|gb|BM270346.1|BM270346
genomic: TTCAGATCACAACAGATCCACCATTCACCTCACCACTTTCTCTTCACAAGgtatgctgaa ... attgtgacagGCAAATCTAACAAGAAAAAGTAGTCTCTGAAGCCGATCCAGTGTCTTGTGA
EST: TTCAGATCACAACAGATCCACCATTCACCTCACCACTTTCTCTTCACAAG GCAAATCTAACAAGAAAAAGTAGTCTCTGAAGCCGATCCAGTGTCTTGTGAEST: gi|26058446|gb|CA801360.1|CA801360
genomic: TTCAGATCACAACAGATCCACCATTCACCTCACCACTTTCTCTTCACAAGgtatgctgaa ... attgtgacagGCAAATCTAACAAGAAAAAGTAGTCTCTGAAGCCGATCCAGTGTCTTGTGA
EST: TTCAGATCACAACAGATCCACCATTCACCTCACCACTTTCTCTTCACAAG GCAAATCTAACAAGAAAAAGTAGTCTCTGAAGCCGATCCAGTGTCTTGTGA
genomic: TTCAGATCACAACAGATCCACCATTCACCTCACCACTTTCTCTTCACAAGgtatgctgaa ... attgtgacagGCAAATCTAACAAGAAAAAGTAGTCTCTGAAGCCGATCCAGTGTCTTGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAAAGCTTCAGATCACAACAGATCCACCATTCACCTCACCACTTTCTCTTCACAAGgtatgctgaaaatgaaatacccactttgactgtgttaactttatactatttcatttctctgaccaaaacagattcattttgtacgaggatttttttttctttcaagctttcaaagtttaaccctttttcaagctcattgttgtttttatgtttttggttcatatgagtagctcaagttattgtgacag
- - - - - AGATCA