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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAACTGGATTTCTAGAGACAAGGATAAGTTTAAATTCCCGGGAGGTGGTACACAGTTTATACATGGGGCAAATGAATACTTGGACCATATTTCTAAGgttgttatgctgtttttgtatactttggttttggtttcacctttttcttaggagaatgtatgcaggggtgcaccttataggaatctgatgttggactattgcaattgtag

Basic information

species Glycine max
transcript GLYMA11G34430.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G34430.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G39750.1 (Arabidopsis thaliana), 5'ss of exon 2
CCAAAACTGGATTTCTAGAGACAAGGATAAGTTTAAATTCCCGGGAGGTGGTACACAGTTTATACATGGGGCAAATGAATACTTGGACCATATTTCTAAGgttgttatgctgtttttgtatactttggttttggtttcacctttttcttaggagaatgtatgcaggggtgcaccttataggaatctgatgttggactattgcaattgtag
 || |||||||||||  |||||||| | ||||| || || || |||||||||||||||||||| ||||||||  || | ||||||||||| || |||||||| | |      |||||  |     | ||| | ||||  |   |    |       | |||| |    | || || ||    | ||     |||| | |||    || ||
TCAGAACTGGATTTCACGAGACAAGAACAAGTTCAAGTTTCCTGGAGGTGGTACACAGTTTATTCATGGGGCTGATCAGTACTTGGACCAGATGTCTAAGgtggct----catttttccaagtagtagttcttgtttttcgcgtcaactg------tttatgtatcttttcatctgatgttgagct----ctggagt-ttgtgtctgcag