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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGgcaagctgagtctttaatttttcattcagcttctcaggattctgtggcttgatatacggtgtgacgctgtctgtcaatgtgaataagtttaggtgtggtatggtatgcttgattaagtaattctgcagttgtggtttgataaatttgatggttataatgcag

Basic information

species Glycine max
transcript GLYMA11G33970.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G33970.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 5'ss of exon 3
GGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGgcaagctgagtctttaatttttcattcagcttctcaggattctgtggcttgatatacggtgtgacgctgtctgtcaatgtgaataagtttaggtgtggtatggtatgcttgattaagtaattctgcagttgtggtttgataaatttgatggttataatgcag
|| || ||||| || ||||| || ||||| || |||||| | ||||| | |||||||||||| || || || || |||||||| ||||||||||| |      | ||       ||| |||| | || || |  |       |||| | ||  ||      |  |||| | |    ||      ||                                                                      
GGATACGTTGGCAACAAATCAGCAGTCTTTCCCCTGCAACTCCTGGGCTTTGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGgtagaggtgggctgcg---cttcgttcaacatcgcacg--tgcaatctttgacacacc-tgaataattccctgttatttcatat---cccag----------------------------------------------------------------------

upper sequence: GLYMA11G33970.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 4
GGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGgcaagctgagtctttaatttttcattcagcttctcaggattctgtggcttgatatacggtgtgacgctgtctgtcaatgtgaataagtttaggtgtggtatggtatgcttgattaagtaattctgcagttgtggtttgataaatttgatggttataatgcag
||||||||||| || ||||| || ||||| || |||||  | || || | ||||||||||||||| || ||||| |||||||| ||||||||||| ||    |     |   | | ||  ||   ||  |  ||||     ||||  | ||      ||  |  | ||   ||||  | |  | ||                                                                      
GGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaatgtatatcgtggatgtaca--caatctcgtacaattc----acttgggacacataa--acaattccagt---tgtgtgttatctcag----------------------------------------------------------------------

upper sequence: GLYMA11G33970.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G37850.3 (Arabidopsis thaliana), 5'ss of exon 3
GGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGgcaagctgagtctttaatttttcattcagcttctcaggattctgtggcttgatatacggtgtgacgctgtctgtcaatgtgaataagtttaggtgtggtatggtatgcttgattaagtaattctgcagttgtggtttgataaatttgatggttataatgcag
|| ||||||||||| ||||| |||||||| ||||| |||||  |||| ||||||||||||||||| || ||||| || || |||||||||||||| ||  |  |     | |     ||  ||   || | | | |||    ||  | |  |  ||  |   || | |   |||   | | | ||    || | ||| ||   |  | ||    || | |||                                  
GGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGgtaatatttggtcacagt----aatgtagagcctaatgttcctg-aaattactgt-tgtcgtatcttcgt-tattggtgtatctgaatcta---ctgatttggcat---tactaaaacttttttccag----------------------------------

upper sequence: GLYMA11G33970.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 3
GGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGgcaagctgagtctttaatttttcattcagct--tctcaggattctgtggcttgatatacggtgtgacgctgtctgtcaatgtgaataagtttaggtgtggtatggtatgcttgattaagtaattctgcagttgtggtttgataaatttgatggttataatgcag
|| |||||||| |||||||| |||||||| || || ||  ||||||| |||||||| |||||||| ||||| || ||||| || ||||| ||||||||||||      | ||  |||| |||     |||||| | ||||  || ||| ||| |||| || |    ||| |||| |  || |||| |||  ||  ||  ||      ||| ||      |  | || ||||| |  || ||  ||    ||  |||||
GGATATGTTGGCAATAAATCGGCTGTCTTTCCCCTCCAGCTACTGGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctg-----cttatacttcactcaaacagtctcagaactctgaagcctgaaatatggtgcgaggtcaactgccaatctatatgagttcaggcatgagatcctagtagcaattgag-----gttaaattatggttagtcaacttgaat----atcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718098|gb|BW677395.1|BW677395
EST:     GGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAG                         GATACCCAACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATC
genomic: GGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGgcaagctgag ... tataatgcagGATACCCAACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATC