Sequence
atgc intronic sequence ATGC exonic sequenceGCCAATAGCAAGGTGGTATTTCCCACCAGAAGTTGATTACAGATTAGAAGCATTGCCACCAAATGCCAAAGGACTGGTGGTGTGGATAATTGAAGCCAAGgtgtgaggattataacattatttatttaattgtatttcaatgagaatttataattagaaaacacttacaggataaaagttgatttctaattggttgaggg...
Basic information
species | Glycine max |
transcript | GLYMA11G31620.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G31620.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G58260.1 (Arabidopsis thaliana), 5'ss of exon 2
GCCAATAGCAAGGTGGTATTTCCCACCAGAAGTTGATTACAGATTAGAAGCATTGCCACCAAATGCCAAAGGACTGGTGGTGTGGATAATTGAAGCCAAGgtgtgaggat-tataacattatttatttaattgtatttcaatgagaatttataattagaaaacacttacaggataaaagttgatttctaattggttgaggg
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ACCTATAGCAAGATGGTATTATCCACCAGAAGTTGATTACAGGCTCGCTGCTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGgtttgagtttctctcatttgatctgttctcccacatgctcttt----ctcatatttccatttcactcag--------------------------------
upper sequence: GLYMA11G31620.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g08360.t01 (Vitis vinifera), 5'ss of exon 2
GCCAATAGCAAGGTGGTATTTCCCACCAGAAGTTGATTACAGATTAGAAGCATTGCCACCAAATGCCAAAGGACTGGTGGTGTGGATAATTGAAGCCAAGgtgtgaggattataacattatttatttaattgtatttcaatgagaatttataattagaaaacacttacaggataaaagttgatttctaattggttgaggg
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GCCCATTGCAAGGTGGTATTTTCCCCCAGAAGTGGACTATAGGCTCTCTTTGCTGCCTCCAAACGCCAAGGGACTTGTGGTCTGGATCATTGAAGCCAAGgtaggcaccctaccac-tcccataaccaat-gcagtttaa-gttaaccctttgttgaactatgccttcatatccag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31309795|gb|CD394998.1|CD394998EST: CATTGCCACCAAATGCCAAAGGACTGGTGGTGTGGATAATTGAAGCCAAG GTTCTCTCTAAGGCAGAACTGCAGTTCCTAGCTTTGCTGCCAACACTTAGG
genomic: CATTGCCACCAAATGCCAAAGGACTGGTGGTGTGGATAATTGAAGCCAAGgtgtgaggat ... gcatacacagGTTCTCTCTAAGGCAGAACTGCAGTTCCTAGCTTTGCTGCCAACACTTAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCAATAGCAAGGTGGTATTTCCCACCAGAAGTTGATTACAGATTAGAAGCATTGCCACCAAATGCCAAAGGACTGGTGGTGTGGATAATTGAAGCCAAGgtgtgaggattataacattatttatttaattgtatttcaatgagaatttataattagaaaacacttacaggataaaagttgatttctaattggttgaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggataaaa