1 5' 3' | 2 5' 3' | 3 5' 3' |
TGTAATTGACGACATCAAAAGTCAGTTGGAGAGTTCTTGTCCGGGGATTGTTTCCTGTGCAGATATTGTTGCTGTTGCTGCACGAGATTCTGTCGTAGCTgtaagttaatttatttaatacaataaccagtatgaaatataaaaaacaagataaattaataaacaaaaaaaatcaccatctatatatagtaatgtaaaaa...
species | Glycine max |
transcript | GLYMA11G29890.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTGCACGAGATTCTGTCGTAGCT TTGGGTGGTCCATCATGGACAATAGGGTTAGGCAGAAGAGATTCAACCGCTEST: gi|192295565|gb|FG988139.1|FG988139
genomic: GCTGCACGAGATTCTGTCGTAGCTgtaagttaat ... attatctcagTTGGGTGGTCCATCATGGACAATAGGGTTAGGCAGAAGAGATTCAACCGCT
EST: TTTCCTGTGCAGATATTGTTGCTGTTGCTGCACGAGATTCTGTCGTAGCT TTGGGTGGTCCATCATGGACAATAGGGTTAGGCAGAAGAGATTCAACCGCTEST: gi|13481728|gb|BG511071.1|BG511071
genomic: TTTCCTGTGCAGATATTGTTGCTGTTGCTGCACGAGATTCTGTCGTAGCTgtaagttaat ... attatctcagTTGGGTGGTCCATCATGGACAATAGGGTTAGGCAGAAGAGATTCAACCGCT
EST: TTTCCTGTGCAGATATTGTTGCTGTTGCTGCACGAGATTCTGTCGTAGCT TTGGGTGGTCCATCATGGACAATAGGGTTAGGCAGAAGAGATTCAACCGGT
genomic: TTTCCTGTGCAGATATTGTTGCTGTTGCTGCACGAGATTCTGTCGTAGCTgtaagttaat ... attatctcagTTGGGTGGTCCATCATGGACAATAGGGTTAGGCAGAAGAGATTCAACCGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAATTGACGACATCAAAAGTCAGTTGGAGAGTTCTTGTCCGGGGATTGTTTCCTGTGCAGATATTGTTGCTGTTGCTGCACGAGATTCTGTCGTAGCTgtaagttaatttatttaatacaataaccagtatgaaatataaaaaacaagataaattaataaacaaaaaaaatcaccatctatatatagtaatgtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa