1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATCCTTGTACCATACCATGGATGgtcgattccttttatcaacttttcatgttcactttgtccttaaatatttttttttgttaaaaaatcttttggtctgatttgtcaacctcaccattttactactcatggatatcttttgcag
species | Glycine max |
transcript | GLYMA11G27190.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTGCACTCTTCAATCCTTGTACCATACCATGGATG GAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGAEST: gi|151411340|gb|EV281151.1|EV281151
genomic: CTTGCACTCTTCAATCCTTGTACCATACCATGGATGgtcgattcct ... tcttttgcagGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGA
EST: ATTGTGGGCCACATCTTGCACTCTTCAATCCTTGTACCATACCATGGATG GAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGAEST: gi|192308420|gb|FK000916.1|FK000916
genomic: ATTGTGGGCCACATCTTGCACTCTTCAATCCTTGTACCATACCATGGATGgtcgattcct ... tcttttgcagGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGA
EST: ATTGTGGGCCACATCTTGCACTCTTCAATCCTTGTACCATACCATGGATG GAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGAEST: gi|7286123|gb|AW598610.1|AW598610
genomic: ATTGTGGGCCACATCTTGCACTCTTCAATCCTTGTACCATACCATGGATGgtcgattcct ... tcttttgcagGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGA
EST: ATTGTGGGCCACATCTTGCACTCTTCAATGCTTGTACCATACCATGGATG GAGAAGTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAATGA
genomic: ATTGTGGGCCACATCTTGCACTCTTCAATCCTTGTACCATACCATGGATGgtcgattcct ... tcttttgcagGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATCCTTGTACCATACCATGGATGgtcgattccttttatcaacttttcatgttcactttgtccttaaatatttttttttgttaaaaaatcttttggtctgatttgtcaacctcaccattttactactcatggatatcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA