Sequence
atgc intronic sequence ATGC exonic sequenceTGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTTTGTGAGAATGGTTTTATGAGGCAGCAATTGCATACTgtaagtgtgtttgtgtgttctgtctgaatgtcaattcttcactttttggggctcttaagcagaaaaaacattgatgaaaagaatgtgtactaaatgtgga...
Basic information
species | Glycine max |
transcript | GLYMA11G20520.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G20520.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G469551_T02 (Zea mays), 5'ss of exon 3
TGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTTTGTGAGAATGGTTTTATGAGGCAGCAATTGCATACTgtaagtgtgtttgtgtgttctgtctgaatgtcaattctt--cactttttggggctcttaagcagaaaaaacattgatgaaaagaatgtgtactaaatgtgga----------------
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TGCAATGAACAAGCTTCTCATGGAGGAGAATGAGCGATTGCAGAAGCAGGTTTCCCAGCTGGTTCACGAGAATGCGTACATGAAGCAGCAGCTGCAGAATgtaagc---cctggttttgttaaccagaagccatatcgtggcatttctttggaatacct-gcatgcttcttgctgccttttgttttctcttctgataccatctctttactgcttacag
upper sequence: GLYMA11G20520.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G60690.1 (Arabidopsis thaliana), 5'ss of exon 2
TGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTTTGTGAGAATGGTTTTATGAGGCAGCAATTGCATACTgt---aagtgtgtttgtgtgttctgtctgaatgtcaattcttca----ctttttggggctctta--agcagaaaa---aacattgatgaaaagaatgtgtactaaatgtgga--------
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---GATGAATAAACTGTTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTTTCTCAGCTTGTCTGCGAAAATGGATATATGAAACAGCAGCTAACTACTGTTgtatgtaacttaacatttccttttgtcaaatgtgttcttaaagaatcatttgttactcctatcagttcaacatgtagcttgagttataaagttactgacttgttgttttaacttcag
upper sequence: GLYMA11G20520.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 2
TGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTTTGTGAGAATGGTTTTATGAGGCAGCAATTGCATACTgtaagtgtgtttgtgtgttctgtctgaatgtca-attcttcactttttgg-ggctcttaagcagaaaaaacattgatgaaa-agaatgtgtactaaatgtgga
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GGCCATGAACAAGCTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAAGTGTCGCAGCTGGTATGCGAGAATGGGTATATGCGACAACAGCTTCAAACTgtatgttcttgttcatattatagttgg-tgtcatacttatttcttccaagcggatctctatccttttatggttatctgcattatgatagttttgaaaagca--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22927909|gb|BU545048.1|BU545048EST: TGTCACAGCTTGTTTGTGAGAATGGTTTTATGAGGCAGCAATTGCATACT CCATCGGCAACAACTACTGATGCTAGTTGTGATTCGGTGGTTACCACTCCT
genomic: TGTCACAGCTTGTTTGTGAGAATGGTTTTATGAGGCAGCAATTGCATACTgtaagtgtgt ... ttccctgcagCCATCGGCAACAACTACTGATGCTAGTTGTGATTCGGTGGTTACCACTCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTTTGTGAGAATGGTTTTATGAGGCAGCAATTGCATACTgtaagtgtgtttgtgtgttctgtctgaatgtcaattcttcactttttggggctcttaagcagaaaaaacattgatgaaaagaatgtgtactaaatgtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagaa