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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGTgtgagtggttcttttatctcacaaatgtgtcatttagttaagttagcttgctgaggtttgtttcttctggcgttgttgttttttatgctctctttctaatgtggatatttttgtttgtttttcttaatttag

Basic information

species Glycine max
transcript GLYMA11G20420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G20420.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g62720.1 (Oryza sativa), 5'ss of exon 2
TTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGTgtgagtg--gttcttttatctcacaaatgtgtcatttagttaagttagcttgctgaggtttgtttcttctggcgttgttgttttttatgctctctttctaatgtggatatttttgtttgtttttcttaatttag
|| |    || ||  |    |  |||||||| ||||||||||| || || ||||| || || ||||||||||| ||||||| |||   |||   || |   ||||    || || ||  |||||      | |  |||||  || | |  | |||   |      ||    |   |   ||    ||                          
TTATGCAAACAGGACCAACAACCGCTGCATCAGGATCTGCTTATGCAGAATTTGGGAAGACAAAGGTCATTGTGTCAGTgtaagtatagttgcatttttatacaatcacgttatgtatgtaagta----cgttatggtttagtt-tccaagtgttaaagaac---atatctttcattagatcccaat--------------------------

upper sequence: GLYMA11G20420.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G27490.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGTgtgagtggttcttttatctcacaaatgtgtcatttagttaagttagcttgctgaggtttgtttcttctggcgttgttgttttttatgctctctttctaatgtggatatttttgtttgtttttcttaatttag
|  |    ||||||||||||| | |||| ||||| |||||||| ||||||||||| || || || || ||||| |||||||||||  || ||  ||   | || |     ||| ||     || || |  | |  ||| | ||  ||    | | | || | | | |     || ||                                  
TACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACACTAAAGTTATTGTTTCAGTgtgagta-ttattagattagaaaacttgtatattcag---gatttgcat--taacttttctgtcagctaaattcgcttttgtgtgttcaaaaattttag---------------------------------

upper sequence: GLYMA11G20420.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g02660.t01 (Vitis vinifera), 5'ss of exon 2
TTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGTgtgagtggttcttttatctcacaaatgtgtcatttagttaagttagcttgctgaggt-ttgtttcttctggcgttgttgttttttatgctctctttctaatgtggatatttttgtttgtttttcttaatttag
|| | | |||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| || ||||||||  |||||||   | |  ||     |||||   |  | |   ||  |    | || ||| |  | ||    | | || |     |       | |                                 
TTCTGAAGACTGGTGCTGTGAATGCTGCATCAGGATCTGCTTATGCAGAGTTTGGAAATACCAAGGTCATTGTGTCTGTgtgagtatttctttttctttattaagagcccatttcactttgattttttattattttattatttttatttgcaggatagattctggaaatggacccatga---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298176888|gb|HO026895.1|HO026895
EST:     TCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGT                         ATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCG
genomic: TCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGTgtgagtggtt ... cttaatttagATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCG
EST: gi|192299065|gb|FG990393.1|FG990393
EST:     TCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGT                         ATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGAGCG
genomic: TCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGTgtgagtggtt ... cttaatttagATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCG
EST: gi|192302684|gb|FG993704.1|FG993704
EST:     TCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGT                         ATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGAGCG
genomic: TCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGTgtgagtggtt ... cttaatttagATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCG