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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACCTCATCTCCTCGGAGTACCCCTTCTGGAACCGAAGCAGAGGCTCCGACCACGTCTTCGTCGCGTCGCACGATTTCGGCTCGTGTTTCCACACCCTGgtgcgtgcgttgaacgcgttttgtcgttcgctgttttcgtaggttcattcgattactattcgctgaatgattttttttttttttgtttttttgtgaag

Basic information

species Glycine max
transcript GLYMA11G19910.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19910.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g01760.2 (Oryza sativa), 5'ss of exon 1
AAACCTCATCTCCTCGGAGTACCCCTTCTGGAACCGAAGCAGAGGCTCCGACCACGTCTTCGTCGCGTCGCACGATTTCGGCTCGTGTTTCCACACCCTGgtgcgtgcgttgaacgcgt-tttgtcgttcgctgttttcgtaggttcattcgattactattcgctgaatgattttttttttttttgtttttttgtgaag-----
  ||||| ||    |  ||   |||| |||||||||   |   ||| | |||||||| ||||||||||||||||| |||||| | || |||||  || ||||  |  | | || | | | |     | | || || | |||  |         ||||||   | || ||||| ||| ||    ||||    | |  |       
CGACCTCGTCCGGGCCCAGATGCCCTACTGGAACCGCTCCGCCGGCGCGGACCACGTGTTCGTCGCGTCGCACGACTTCGGCGCCTGCTTCCATCCCATGgtcag--cttcgatctcttctccactggttgc-gtctgcgttaggcggactacttactagatgatgcatgatatttcttgagcttgtaagat-gcaagttgctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9440092|gb|BE440603.1|BE440603
EST:     ACCACGTCTTCGTCGCGTCGCACGATTTCGGCTCGTGTTTCCACACCCTG                         GAGGACGTGGCGATGGCTGATGGCGTGCCAGAGATTGTGAGGAACTCGATC
genomic: ACCACGTCTTCGTCGCGTCGCACGATTTCGGCTCGTGTTTCCACACCCTGgtgcgtgcgt ... ttttgtgaagGAGGACGTGGCGATGGCTGATGGCGTGCCAGAGATTGTGAGGAACTCGATC