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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATTAATCTGGCTGCGATTTGCACTCCCGCGGATTACAACACTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaactaaccacctgttcaaattgaaaatgtgaaacgctgaatcttgagggtttgagttctatgcgacgtcgttttgtgctttgtag

Basic information

species Glycine max
transcript GLYMA11G19550.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19550.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 5'ss of exon 2
ACTATTAATCTGGCTGCGATTTGCACTCCCGCGGATTACAACACTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaa--ctaactaaccacctgttcaaattgaaaatgtgaaacgctgaatcttgagggtttgagttctatgcgacgt-cgttttgtgctttgtag
|| || || ||||| ||||| ||||| || || || |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |||||||  |   ||   | ||  | || |||     | |       |  | |   || |    | |  |    |||||  ||  |||||   |   
ACGATCAACCTGGCGGCGATCTGCACGCCGGCCGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGACGCGCTCCCTGTGgtaatccctcctcttctccactccagatttcttct-tcttcttttctaccactagtgcagaattgttgatggacgtgtgtgatgtgcacag---

upper sequence: GLYMA11G19550.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G063949_T01 (Zea mays), 5'ss of exon 2
ACTATTAATCTGGCTGCGATTTGCACTCCCGCGGATTACAACACTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgta-actaactaaccacctgt-tcaaattgaaaatgtgaaacgctgaatcttgagggtttgagttctatgcgacgtcgttttgtgctttgtag
|| || || ||||| ||||| ||||| || || || |||||||||||||| || |||||||| |||||||| ||||||||||| ||||| ||||||   | ||  || | | |  |||      |||    | ||     || |  | |       |      |      ||   |          
ACCATAAACCTGGCCGCGATCTGCACGCCGGCCGACTACAACACTCGCCCACTTGACACCATCTACAGCAACTTCATCGACGCACTCCCAGTGgtacgattacctactatcagcatcatcacacaaacacaagacagaacatgtcaatgtcactcatcactcactctcctgtccag----------

upper sequence: GLYMA11G19550.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G167872_T01 (Zea mays), 5'ss of exon 2
ACTATTAATCTGGCTGCGATTTGCACTCCCGCGGATTACAACACTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaactaaccacctgttcaaattgaaaatgtgaaacgctgaatcttgagggtttgagttctatgcgacgtcgttttgtgctttgtag
|| || || ||||| || || ||||| || ||||| |||||||| ||||| ||||||||||| |||||||| |||||||| || ||||| |||||       | | |   | ||    | | |  |   |    ||  | ||     |  |||   |  |    | || ||   | ||||  ||
ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGATGCACTCCCAGTGgtcggcccttgatctttttttt---tcgcatttccta----ctacagctgacatggctgatgaccgtttc-cttccttcccttcttttcag

upper sequence: GLYMA11G19550.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 2
ACTATTAATCTGGCTGCGATTTGCACTCCCGCGGATTACAACACTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaactaaccacctgttcaaattgaaaatgtgaaacgctgaatcttgagggtttgag------ttctatgcgacgtcgttttgtgctttgtag----------------------------
|| || ||||| |||||||| || ||||| || |||||||| || || ||||| ||||| || |||||||||||||| || || ||||| ||||||  ||  | |   | | | ||  |||      | |   |   ||| |||   |||||||      || |||| ||    | |||  | | ||                               
ACGATAAATCTAGCTGCGATCTGTACTCCAGCAGATTACAATACGCGTCCTCTTGACACTATCTACAGCAATTTCATTGATGCTCTCCCAGTGgtatgtattttat-gcttttgcagtttgtttggtttagtggagcaattttgtaagtttgaggaatatttttatgtgatacggattttagttgtgacattgagtggtcattggttttggtatgtag

upper sequence: GLYMA11G19550.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 2
ACTATTAATCTGGCTGCGATTTGCACTCCCGCGGATTACAACACTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaactaaccacctgttcaaattga---------aaatgtgaaac----gctgaatcttgagggttt--gagttctatgcgacgtcgttttgtgctttgtag-----------
||||| |||||||| ||||| || ||||||||||| ||||| ||||| |||||||| || ||||||||||||||||| || || || || ||||||      |     | ||||  ||||           ||   | | |     | |   | ||  |  | |  ||  ||| |  || |  | | || | ||||  |           
ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCCCTTCCAGTGgtatgctgttggatgcttgtttgaattcgttttcgtccaaggataatattgttgttagtttttttgtttctcggaaatctgt-tgaagctgatgtgcgttttgatgtggctctttag

upper sequence: GLYMA11G19550.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 2
ACTATTAATCTGGCTGCGATTTGCACTCCCGCGGATTACAACACTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaactaaccacctgttcaaatt--------------gaaaatgt--------gaaacgctgaatcttgagggt---ttgagttctatgcg-acgtcgttttgtgctttgtag-----------
||| | |||||||||||||| || |||||||| || ||||| ||||| |||||||| || ||||||||||||||||| || || || || ||||||      |       ||||  ||||              || |||||        |      ||  ||| |    |   ||||     |||    ||| | |||| | ||||  |           
ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCACTTCCAGTGgtatgctgttggatgtttgtttgaattatttttcgttcaaagataatgttgttatttgtctttttgtttctcggaaatctgttgaagctgatgtatgcgttgatttgcgttttgatgtggctttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7478600|gb|AW666329.1|AW666329
EST:     CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
genomic: CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaact ... tgctttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
EST: gi|209702421|gb|BW656397.1|BW656397
EST:     CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
genomic: CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaact ... tgctttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
EST: gi|298195051|gb|HO043579.1|HO043579
EST:     CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
genomic: CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaact ... tgctttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
EST: gi|208177260|gb|GD980013.1|GD980013
EST:     CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTA
genomic: CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaact ... tgctttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTA
EST: gi|7283460|gb|AW596067.1|AW596067
EST:     CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
genomic: CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaact ... tgctttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
EST: gi|33390053|gb|CA853260.1|CA853260
EST:     CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
genomic: CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaact ... tgctttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
EST: gi|208323978|gb|GE124439.1|GE124439
EST:     CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
genomic: CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaact ... tgctttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
EST: gi|298198329|gb|HO039868.1|HO039868
EST:     CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
genomic: CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaact ... tgctttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
EST: gi|10237322|gb|BE806210.1|BE806210
EST:     CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
genomic: CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaact ... tgctttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
EST: gi|9440275|gb|BE440783.1|BE440783
EST:     CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
genomic: CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaact ... tgctttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
EST: gi|27445843|gb|CA952966.1|CA952966
EST:     CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
genomic: CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaact ... tgctttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
EST: gi|18039430|gb|BM307724.1|BM307724
EST:     CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
genomic: CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaact ... tgctttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
EST: gi|14008730|gb|BG725334.1|BG725334
EST:     CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC
genomic: CTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaactaact ... tgctttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCCACTTGC