Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGATGGTATGGGAAGTAATCATCAAGATGAGAGTAAAGAACCGCTGAAGAATGTATTGGATGAACTTGAAAAAATACTTATACATGCCAACTTACCTgtgagtaaattttcttaacttctactttccacctagcttctgctctagcaccattttctagtttacagcatggacttctagtcattcttaaaagtctcat...

Basic information

species Glycine max
transcript GLYMA11G18710.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053254|gb|BM731921.1|BM731921
EST:     AGAATGTATTGGATGAACTTGAAAAAATACTTATACATGCCAACTTACCT                         TATCCTGTTTATTTTGCATTCGAGGATGATAACATTGATGCTGTGTTAACT
genomic: AGAATGTATTGGATGAACTTGAAAAAATACTTATACATGCCAACTTACCTgtgagtaaat ... cttgttgcagTATCCTGTTTATTTTGCATTCGAGGATGATAACATTGATGCTGTGTTAACT
EST: gi|9259671|gb|BE347818.1|BE347818
EST:     AAAATACTTATACATGCCAACTTACCT                         TATCCTGTTTATTTTGCATTCGAGGATGATAACATTGATGCTGTGTTAACT
genomic: AAAATACTTATACATGCCAACTTACCTgtgagtaaat ... cttgttgcagTATCCTGTTTATTTTGCATTCGAGGATGATAACATTGATGCTGTGTTAACT
EST: gi|6502320|gb|AW203693.1|AW203693
EST:     AGAATGTATTGGATGAACTTGAAAAAATACTTATGCATGCCAACTTACCT                         TATCCTGTTTATTTTGCATTCGA
genomic: AGAATGTATTGGATGAACTTGAAAAAATACTTATACATGCCAACTTACCTgtgagtaaat ... cttgttgcagTATCCTGTTTATTTTGCATTCGA
EST: gi|15284923|gb|BI468814.1|BI468814
EST:     AGAATGTATTGGATGAACTTGAAAAAATACTTATACATGCCAACTTACCT                         TATCCTGTTTATTTTGCATTCGAGGATGATAACATTGATGCTGTGTTAACT
genomic: AGAATGTATTGGATGAACTTGAAAAAATACTTATACATGCCAACTTACCTgtgagtaaat ... cttgttgcagTATCCTGTTTATTTTGCATTCGAGGATGATAACATTGATGCTGTGTTAACT
EST: gi|209720188|gb|BW674526.1|BW674526
EST:     AGAATGTATTGGATGAACTTGAAAAAATACTTATACATGCCAACTTACCT                         TATCCTGTTTATTTTGCATTCGAGGATGATAACATTGATGCTGTGTTAACT
genomic: AGAATGTATTGGATGAACTTGAAAAAATACTTATACATGCCAACTTACCTgtgagtaaat ... cttgttgcagTATCCTGTTTATTTTGCATTCGAGGATGATAACATTGATGCTGTGTTAACT