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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAGgtatgtatgagggtctattgctatcatgccaacgaacataactcatagtatattacacattctgattatattttgatgtaattttag

Basic information

species Glycine max
transcript GLYMA11G15900.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193510334|gb|FK467616.1|FK467616
EST:     ATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAG                         GAGGTGAACTTATGGAAAAGCATGGGGGAATTTAATCTCCTTGGGATTACT
genomic: ATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAGgtatgtatga ... gtaattttagGAGGTGAACTTATGGAAAAGCATGGGGGAATTTAATCTCCTTGGGATTACT
EST: gi|213600672|gb|DB956190.1|DB956190
EST:     ATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAG                         GAGGTGAACTTATGGAAAAGCATGGGGGAATTTAATCTCCTTGGGATTACT
genomic: ATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAGgtatgtatga ... gtaattttagGAGGTGAACTTATGGAAAAGCATGGGGGAATTTAATCTCCTTGGGATTACT
EST: gi|298198477|gb|HO040016.1|HO040016
EST:     ATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAG                         GAGGTGAACTTATGGAAAAGCATGGGGGAATTTAATCTCCTTGGGATTACT
genomic: ATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAGgtatgtatga ... gtaattttagGAGGTGAACTTATGGAAAAGCATGGGGGAATTTAATCTCCTTGGGATTACT
EST: gi|209712354|gb|BW671206.1|BW671206
EST:     ATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAG                         GAGGTGAACTTATGGAAAAGCATGGGGGAATTTAATCTCCTTGGGATTACT
genomic: ATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAGgtatgtatga ... gtaattttagGAGGTGAACTTATGGAAAAGCATGGGGGAATTTAATCTCCTTGGGATTACT
EST: gi|15663805|gb|BI701176.1|BI701176
EST:     ATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAG                         GAGGTGAACTTATGGAAAAGCATGGGGGAATTTAATCTCCTTGGGATTACT
genomic: ATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAGgtatgtatga ... gtaattttagGAGGTGAACTTATGGAAAAGCATGGGGGAATTTAATCTCCTTGGGATTACT