Sequence
atgc intronic sequence ATGC exonic sequenceAGTGGCGATAAAGAAGATTGGGAATGCGTTTGACAACAGGATCGATGCCAAGAGAACGCTCAGGGAAATCAAGCTTCTCTGTCACATGGAACATGATAACgtgcgccttgttttttctgattcttttatttgtagaattaacaattagtgatttgtgcattttttttttggtttgatttggtccatttttatgcag
Basic information
species | Glycine max |
transcript | GLYMA11G15590.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G15590.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g03620.t01 (Vitis vinifera), 5'ss of exon 2
AGTGGCGATAAAGAAGATTGGGAATGCGTTTGACAACAGGATCGATGCCAAGAGAACGCTCAGGGAAATCAAGCTTCTCTGTCACATGGAACATGATAACgtgcgc-cttgttttttctgattcttttatttgtagaattaacaattagtgatttgtgcattttttttttggtttgatttggtccattt------ttatgcag
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AGTCGCAATCAAGAAGATTGGGAATGCATTTGACAACAGGATTGATGCTAAAAGGACACTCCGGGAGATCAAACTCCTTTGCCATATGGATCATGAAAATgtattcacatgagtcatagaactttgttgcttgggg---tggcatattctgggcagttactttctttttcaatttgtctctgtttgtttgctgctttatttat
upper sequence: GLYMA11G15590.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ04892 (Selaginella moellendorffii), 5'ss of exon 2
AGTGGCGATAAAGAAGATTGGGAATGCGTTTGACAACAGGATCGATGCCAAGAGAACGCTCAGGGAAATCAAGCTTCTCTGTCACATGGAACATGATAACgtgcgccttgttttttctgattcttttatttgtagaattaacaattagtgatttgtgcattttttttttggtttgatttggtccatttttatgcag
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AGTTGCTATCAAGAAAATCGGCAATGCCTTTGACAACAGGATCGATGCCAAGCGCACATTGCGCGAGATCAAGCTGTTGCGGCACATGGATCACGAGAATgtatgtatgctgccttc--gctcattcatttt----gccaaca-tcgctgcctcgtgggtttcag-------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8282912|gb|BE020473.1|BE020473EST: AGAGAACGCTCAGGGAAATCAAGCTTCTCTGTCACATGGAACATGATAAC ATAATTAAAATAAAGGACATAATTCGGCCAGCGGAGAGGGAGAATTTCAAC
genomic: AGAGAACGCTCAGGGAAATCAAGCTTCTCTGTCACATGGAACATGATAACgtgcgccttg ... ttttatgcagATAATTAAAATAAAGGACATAATTCGGCCAGCGGAGAGGGAGAATTTCAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTGGCGATAAAGAAGATTGGGAATGCGTTTGACAACAGGATCGATGCCAAGAGAACGCTCAGGGAAATCAAGCTTCTCTGTCACATGGAACATGATAACgtgcgccttgttttttctgattcttttatttgtagaattaacaattagtgatttgtgcattttttttttggtttgatttggtccatttttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA