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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTTCTCCCTGTAAGATCAATAAAAGTTTTGCTGGTGGAAGATGATGATTCGACACGCCATGTTGTGCGTGCTCTGTTACGGAATTGTAGTTATGAAGgtattaatgttgtctttgtggtaaatcatgccttagcaccaaggttaacaaattgagattcaagctgtgaattgctaagctaattttttattcattaatt...

Basic information

species Glycine max
transcript GLYMA11G15580.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15580.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g03650.t01 (Vitis vinifera), 5'ss of exon 1
AGATTTCTCCCTGTAAGATCAATAAAAGTTTTGCTGGTGGAAGATGATGATTCGACACGCCATGTTGTGCGTGCTCTGTTACGGAATTGTAGTTATGAAGgtattaatgttgtctttgtggtaaatcatgccttagcaccaaggttaacaaattgagat-tcaagctgtgaattgctaagctaattttttattcattaatt-
|| ||||||||  | |||||| | || ||| | ||||||||| |||||||||||||||||||||| ||   ||||||| | |||||||| ||||||||||||    |  |  | |        |        | | |||  |  | | |   ||  ||  | ||    ||    |||     ||| |   ||    |   | 
AGTTTTCTCCCCATTAGATCACTGAAGGTTCTTCTGGTGGAAAATGATGATTCGACACGCCATGTAGTTACTGCTCTGCTTCGGAATTGCAGTTATGAAGgttggtagttcatatcccaatacagctgcaagtaaacacacacatgagcttgttttgacgttaaatgatgggaagctgga--aatgtcccatctcatgtcta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425747|gb|CA937267.1|CA937267
EST:     TTCAACACGCCATGTTGTGCGTGCTCTGTTACGGAATTGTAGTTATGAAG                         TCACTGATGTTTCCAATGGTCTTCAAGCGTGGAAACTCCTGGAAAATCCAG
genomic: TTCGACACGCCATGTTGTGCGTGCTCTGTTACGGAATTGTAGTTATGAAGgtattaatgt ... ggttttacagTCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGTCCTGGAAGATCCAG
EST: gi|192321789|gb|FK013195.1|FK013195
EST:     TTCGACACGCCATGTTGTGCGTGCTCTGTTACGGAATTGTAGTTATGAAG                         TCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGTCCTGGAAGATCCAG
genomic: TTCGACACGCCATGTTGTGCGTGCTCTGTTACGGAATTGTAGTTATGAAGgtattaatgt ... ggttttacagTCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGTCCTGGAAGATCCAG