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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgtgttcctcactttaaaaaattagttgcacaaaatttaaattcagtggttattttttcaatagtattggaattaagcatgtttaggaagaag...

Basic information

species Glycine max
transcript GLYMA11G15230.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213613664|gb|DB963324.1|DB963324
EST:     GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... gtgtgtgcagTTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|5605689|gb|AI899850.1|AI899850
EST:     CAATGGCTCCTAAAG                         TTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAATGGCTCCTAAAGgtatgttcgt ... gtgtgtgcagTTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|209728121|gb|BW655356.1|BW655356
EST:     GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAAAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... gtgtgtgcagTTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|9821013|gb|BE556523.1|BE556523
EST:     AATGGCTCCTAAAG                         TTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
genomic: AATGGCTCCTAAAGgtatgttcgt ... gtgtgtgcagTTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|22522979|gb|BU081790.1|BU081790
EST:     CAGGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... gtgtgtgcagTTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192334633|gb|FK025866.1|FK025866
EST:     GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... gtgtgtgcagTTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|7588837|gb|AW704624.1|AW704624
EST:     GGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
genomic: GGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... gtgtgtgcagTTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|193411707|gb|FK378632.1|FK378632
EST:     GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAAG                         TTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCA
genomic: GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCT-AAAGgtatgttcgt ... gtgtgtgcagTTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCA
EST: gi|13240461|gb|BG359770.1|BG359770
EST:     GGCTCCTAAAG                         TTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
genomic: GGCTCCTAAAGgtatgttcgt ... gtgtgtgcagTTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|213614607|gb|DB972847.1|DB972847
EST:     GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... gtgtgtgcagTTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192332926|gb|FK025023.1|FK025023
EST:     GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... gtgtgtgcagTTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAG