Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagcccccttttgattaatatatcatgcttttgcttttgccaccctctgacgaattttttctgtgattctcgattcaaagtttggatttttgggtttt...

Basic information

species Glycine max
transcript GLYMA11G14980.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14980.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 5'ss of exon 2
TTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc-----ttttgattaatatatcatgcttttgcttttgccaccctctgacgaattttttctgtgattc-tcgattcaaagtttggatttttgggtttt
|||| ||||||||||| || |||||||| |||||||||||||| || | ||| || |||||||||||||||||||| ||||| || ||||||||||| ||||| |    |     | ||  ||    |   ||| | |    ||||  |   | |   |  |||  |||| ||    | |  |||| |||  ||||   | |  | 
TTTGTAAAAACCCCGTTGATGGCTTCTCCGCCGGTTTGGTCGACGAGAGCAATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttccaatctctttttttgctttgaatgttgtgtactttgttatgtttta--ggttttactctgggaaggattggatcaaggttgagatt---gtgcct-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207735848|gb|GD709333.1|GD709333
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|298167627|gb|HO012890.1|HO012890
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|23050200|gb|BU576979.1|BU576979
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|298182929|gb|HO028142.1|HO028142
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|26268546|gb|CA819609.1|CA819609
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|254337216|gb|GR849276.1|GR849276
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|4290237|gb|AI438040.1|AI438040
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|298183716|gb|HO028929.1|HO028929
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCTGATACTCTCTA                         CGAGGGGGGATTTTTCAGTGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|254319465|gb|GR830716.1|GR830716
EST:     CGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: CGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|254346997|gb|GR857201.1|GR857201
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|213587556|gb|DB969697.1|DB969697
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|192328994|gb|FK019693.1|FK019693
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|151399567|gb|EV269438.1|EV269438
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|33389679|gb|CA852886.1|CA852886
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|151405176|gb|EV274990.1|EV274990
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|151409063|gb|EV278871.1|EV278871
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|151395212|gb|EV265083.1|EV265083
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|9257998|gb|BE346121.1|BE346121
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|192323255|gb|FK018966.1|FK018966
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|33387489|gb|CA850696.1|CA850696
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|8285892|gb|BE023451.1|BE023451
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|298184663|gb|HO029876.1|HO029876
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|19452410|gb|BM953820.1|BM953820
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|298194743|gb|HO043215.1|HO043215
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|14011884|gb|BG726806.1|BG726806
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|254319466|gb|GR830717.1|GR830717
EST:     CGATACTCTCTA                         CGA-GGGGGA-TTTTCAATGCTA-TATGAGTTTCCCATCCAATTACCCAAA
genomic: CGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|208282209|gb|GE074175.1|GE074175
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGAGTTTTTCTAATGCTATTATGAGTTTCCC
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGA-TTTTTC-AATGCTATTATGAGTTTCCC
EST: gi|192334149|gb|FK026530.1|FK026530
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|9899152|gb|BE608179.1|BE608179
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|16104747|gb|BI892487.1|BI892487
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|16104804|gb|BI892544.1|BI892544
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|298167833|gb|HO013096.1|HO013096
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGAATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|254346996|gb|GR857200.1|GR857200
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|298167168|gb|HO010607.1|HO010607
EST:     AACATTTTTAAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|254329130|gb|GR833502.1|GR833502
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|7589996|gb|AW705758.1|AW705758
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|208224042|gb|GE022585.1|GE022585
EST:     GGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: GGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|7685512|gb|AW756160.1|AW756160
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|207769862|gb|GD742176.1|GD742176
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAA
EST: gi|298189056|gb|HO037459.1|HO037459
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|208061404|gb|GD859230.1|GD859230
EST:     AGTGTCACCATAATT-GGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|193465866|gb|FK433779.1|FK433779
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|151406756|gb|EV276571.1|EV276571
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAATTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|17022336|gb|BM093370.1|BM093370
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|298174230|gb|HO017566.1|HO017566
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|254329131|gb|GR833503.1|GR833503
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|6455345|gb|AW186028.1|AW186028
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATNTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|7284473|gb|AW597063.1|AW597063
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|24205272|gb|BU964525.1|BU964525
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|192319304|gb|FK009846.1|FK009846
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|8286011|gb|BE023499.1|BE023499
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|298193687|gb|HO040335.1|HO040335
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|192334148|gb|FK026529.1|FK026529
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|213603235|gb|DB970406.1|DB970406
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|6455503|gb|AW186186.1|AW186186
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: gi|18040549|gb|BM308843.1|BM308843
EST:     AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTA                         CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagcccccttttgattaatatatcatgcttttgcttttgccaccctctgacgaattttttctgtgattctcgattcaaagtttggatttttgggtttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccctc