1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTTAGTGTAGAAGTCATAAATCCAGAGGGAGGTAAAGAAGATTCGGAGGAGGAAGCTCAGAGAGGAAGATGGAAACAGGAGgtgtttatttaattttgttcattttttgtgaagtttttttaatttcaggctttttctattattactttatctccaactccttgtttgcacaattaaaatg...
species | Glycine max |
transcript | GLYMA11G14770.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTAAAGAAGATTCGGAGGAGGAAGCTCAGAGAGGAAGATGGAAACAGGAG GAAAGAGATGGTTACTGGAAGATGATGCAGAAGTATATTGGCTCGGATGTAEST: gi|18039718|gb|BM308012.1|BM308012
genomic: GTAAAGAAGATTCGGAGGAGGAAGCTCAGAGAGGAAGATGGAAACAGGAGgtgtttattt ... gtatataaagGAAAGAGATGGTTACTGGAAGATGATGCAGAAGTATATTGGCTCGGATGTA
EST: GTAAAGAAGATTCGGAGGAGGAAGCTCAGAGAGGAAGATGGAAACAGGAG GAAAGAGATGGTTACTGGAAGATGATGCAGAAGTATATTGGCTCGGATGTAEST: gi|151412307|gb|EV282119.1|EV282119
genomic: GTAAAGAAGATTCGGAGGAGGAAGCTCAGAGAGGAAGATGGAAACAGGAGgtgtttattt ... gtatataaagGAAAGAGATGGTTACTGGAAGATGATGCAGAAGTATATTGGCTCGGATGTA
EST: GTAAAGAAGATTCGGAGGAGGAAGCTCAGAGAGGAAGATGGAAACAGGAG GAAAGAGATGGTTACTGGAAGATGATGCAGAAGTATATTGGCTCGGATGTA
genomic: GTAAAGAAGATTCGGAGGAGGAAGCTCAGAGAGGAAGATGGAAACAGGAGgtgtttattt ... gtatataaagGAAAGAGATGGTTACTGGAAGATGATGCAGAAGTATATTGGCTCGGATGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTAGTGTAGAAGTCATAAATCCAGAGGGAGGTAAAGAAGATTCGGAGGAGGAAGCTCAGAGAGGAAGATGGAAACAGGAGgtgtttatttaattttgttcattttttgtgaagtttttttaatttcaggctttttctattattactttatctccaactccttgtttgcacaattaaaatg
- - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA