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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGAGAGGTTCTCGAAGGAGGAGCAATACGAGTGGTTCAAGGATTATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCTgtatgcttcatattcacacattagggtacgatttgtgattatggaatatggctaacgtgaaaatgtttgcag

Basic information

species Glycine max
transcript GLYMA11G12910.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12910.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g35340.1 (Oryza sativa), 5'ss of exon 2
GGACGAGAGGTTCTCGAAGGAGGAGCAATACGAGTGGTTCAAGGATTATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCTgtatgcttcatattcacacattagggtacga---tttgtgattatggaatatggctaacgtgaaaatgtttgcag---------------------------------------------------------------
||||||| |||||  |||||||||||| || ||||||||||||||||  ||||| || |||||| |  |    || |  ||| | ||      | | ||  |  ||   | | | | |      ||||     |     |||    | ||| |   | |||  |||||   |                                                               
GGACGAGCGGTTCGGGAAGGAGGAGCACTATGAGTGGTTCAAGGATTTCTCCCACTTCCGCCACCTCCTCGCCCCGCTCCTCTCCCCTTCCATCTCGgttcgtctcgcctcctctcttccccccacgaatccctcctgatatcatctttgggtggggggaatttgttttttgtgggttcttgaaatttgaagtctgggggtgaaatgaaatcatctcgaattcgtgttgcgctag

upper sequence: GLYMA11G12910.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G109032_T02 (Zea mays), 5'ss of exon 2
GGACGAGAGGTTCTCGAAGGAGGAGCAATACGAGTGGTTCAAGGATTATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCC--CCATTCCGCTgtatgcttcatattcacacattagggtacgatttgtgattatggaatatggctaacgtgaaa--atgtttgcag-----------------
||||| | |||||  |||||||||||| ||||||||||||||||| |  || || || |||||| |  |    || |  ||| | ||  || |  || ||  | | |     || | |       |  |         | | |  ||    ||  |  |||  |  ||||                    
GGACGCGCGGTTCGGGAAGGAGGAGCACTACGAGTGGTTCAAGGACTTCTCGCACTTCCGCCACCTCCTCGCGCCGCTCCTCTCCCCGTCCCTCTCGgtgcgttccttgccctctccctcctccttttgccccaatcctgtcgcgtagcattagtggtaaatgagctttgtttcttcgctacgcgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182183|gb|HO026358.1|HO026358
EST:     ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCT                         GTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG
genomic: ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCTgtatgcttca ... atgtttgcagGTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG
EST: gi|10847982|gb|BF070555.1|BF070555
EST:     ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCT                         GTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG
genomic: ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCTgtatgcttca ... atgtttgcagGTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG
EST: gi|298173135|gb|HO020119.1|HO020119
EST:     ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCT                         GTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACTGTTGCATAAG
genomic: ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCTgtatgcttca ... atgtttgcagGTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG
EST: gi|7145881|gb|AW507803.1|AW507803
EST:     ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCT                         GTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG
genomic: ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCTgtatgcttca ... atgtttgcagGTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG