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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACCTGAACAAACTAATAAGGAAGACGAGGCTGAACTTTACAAGCCAAAAGTTTCTACCTGGGGTGTCTTTCCTAGACCTGGCAATATTTCAAAAACAgtatggcatttagtgtttgtcaaattgtcctgccgaatgaaaacaacttagtagtccactctttacattttcctttggggccttttcag

Basic information

species Glycine max
transcript GLYMA11G12160.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12160.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0139g00280.t01 (Vitis vinifera), 5'ss of exon 2
---AGAACCTGAACAAACTAATAAGGAAGACGAGGCTGAACTTTACAAGCCAAAAGTTTCTACCTGGGGTGTCTTTCCTAGACCTGGCAATATTTCAAAAACAgtatggcatttagtgtttgtcaaattgtcctgccgaatgaaaacaacttagtagtccactctttacattttcctttggggccttttcag--------------
   | | ||  | | |||     | || ||  |  | ||  | |||||||  || |||||||| ||||| || |||||||||||  |||| || ||||||||||||||  ||||  ||||| |  | ||  | ||   |||  |  || |||    || ||   |    |||||  ||   ||  |   |                
TTCAAATCCCAAGCCAACCC---AAGATGATAACTCGGATTTGTACAAGCTGAAGGTTTCTACATGGGGGGTTTTTCCTAGACCCAGCAACATCTCAAAAACAgtatgatattttctgtttctacattttacttgagaaattgatgcatcttg---gttcatgttgctgattttgtttctaggattaagctactgattggaggggg

upper sequence: GLYMA11G12160.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g01030.t01 (Vitis vinifera), 5'ss of exon 2
---AGAACCTGAACAAACTAATAAGGAAGACGAGGCTGAACTTTACAAGCCAAAAGTTTCTACCTGGGGTGTCTTTCCTAGACCTGGCAATATTTCAAAAACAgtatggcatttagtgtttgtcaaattgtcctgccgaatgaaaacaacttagtagtccactctttacattttcctttggggccttttcag------------
   | | ||  | | |||     | || ||  |  | ||  | ||||||||||| |||||||| ||||| || |||||||||||   ||| || ||||||||||||||  ||||  ||||| |  | ||  | ||   |||  |  || ||| |        |  | |  || |   ||||    |  |  |            
TTCAAATCCCAAGCCAACCC---AAGATGATAACTCGGATTTGTACAAGCCAAAGGTTTCTACATGGGGAGTTTTTCCTAGACCCAACAACATCTCAAAAACAgtatgatattttctgtttctacattttacttgagaaattgatgcatcttggct-catgttactgattttgtttgttggattatgctatgtgagggagtggg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064008|gb|BU578781.1|BU578781
EST:     AAGTTTCTACCTGGGGTGTCTTTCCTAGACCTGGCAATATTTCAAAAACA                         TTTGGTGGTGGAAGAGTTATACGTCCAGGAGAGGTTCTAGAGACCAAAGAA
genomic: AAGTTTCTACCTGGGGTGTCTTTCCTAGACCTGGCAATATTTCAAAAACAgtatggcatt ... gccttttcagTTTGGTGGTGGAAGAGTTATACGTCCAGGAGAGGTTCTAGAGACCAAAGAA
EST: gi|15287531|gb|BI471422.1|BI471422
EST:     AAGTTTCTACCTGGGGTGTCTTTCCTAGACCTGGCAATATTTCAAAAACA                         TTTGGTGGTGGAAGAGTTATACGTCCAGGAGAGGTTCTAGAGACCAAAGAA
genomic: AAGTTTCTACCTGGGGTGTCTTTCCTAGACCTGGCAATATTTCAAAAACAgtatggcatt ... gccttttcagTTTGGTGGTGGAAGAGTTATACGTCCAGGAGAGGTTCTAGAGACCAAAGAA