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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattcgtatcttcgatttgaagcctcgcgttgtatttcataacttgcgatgatgaacgatagatatttcggttttaattaactacgctgtgttga...

Basic information

species Glycine max
transcript GLYMA11G11960.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11960.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g00450.t01 (Vitis vinifera), 5'ss of exon 2
GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattcgt-atcttcgatttgaagcctcgcgt--tgtatttcataacttgcgatgatgaacgatagatatttcggttttaattaactacgctgtgttga--
 | ||||| || ||||||||||| ||||| |||||||| |||||||||||    | |||||  |  | | |||  | ||  |  | || |||| ||  |    |||  | | | ||||| |    || |  | |    ||  |  |  
ATATGCATTTTCTATTTGGTTCTTCGAGCACTCGACACTGTTGgtttgtacctattatcttaaaactcatgccatgtgtgctagaatttataatttctgtc--tgataggttg-tatttgg--catagtgcattcttttgcttaaatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209703098|gb|BW673283.1|BW673283
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|10709996|gb|BF009720.1|BF009720
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGGTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|209722769|gb|BW682867.1|BW682867
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|8826251|gb|BE209981.1|BE209981
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTTCAAG
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGT-CAAG
EST: gi|27446333|gb|CA953456.1|CA953456
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|20813646|gb|BQ298124.1|BQ298124
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|209725283|gb|BW672760.1|BW672760
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|193499460|gb|FK461255.1|FK461255
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|213595316|gb|DB968448.1|DB968448
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|209714966|gb|BW650812.1|BW650812
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT