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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGGTTATGGAGGTTCAGATAATGTGGTTACTGATGGAGTGGAGCTCCAGCTACACCAGAGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgtgacttggttctttgatttcaattcttttttttcatttatagttcatgtcgatttatcccttctcccctaagctgataatagctccaattgtggtttcag

Basic information

species Glycine max
transcript GLYMA11G11950.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298189490|gb|HO037893.1|HO037893
EST:     AGCTACACCAGAGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAG                         CATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
genomic: AGCTACACCAGAGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgtgacttggt ... gtggtttcagCATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
EST: gi|298176009|gb|HO015414.1|HO015414
EST:     AACTACACCAGAGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAG                         CATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGCTATATTGTTACCGGG
genomic: AGCTACACCAGAGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgtgacttggt ... gtggtttcagCATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
EST: gi|208270412|gb|GE067374.1|GE067374
EST:     AGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAG                         CATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
genomic: AGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgtgacttggt ... gtggtttcagCATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
EST: gi|298180588|gb|HO025675.1|HO025675
EST:     AGCTACACCAGAGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAG                         CATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
genomic: AGCTACACCAGAGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgtgacttggt ... gtggtttcagCATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
EST: gi|15285961|gb|BI469852.1|BI469852
EST:     GACTTGAGAAACTTTATATATCGACACGTGCGGGGAAG                         CATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
genomic: GACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgtgacttggt ... gtggtttcagCATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
EST: gi|207713583|gb|GD695258.1|GD695258
EST:     CACCAGAGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAG                         CATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
genomic: CACCAGAGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgtgacttggt ... gtggtttcagCATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
EST: gi|298173699|gb|HO017035.1|HO017035
EST:     AGCTACACCAGAGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAG                         CATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
genomic: AGCTACACCAGAGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgtgacttggt ... gtggtttcagCATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
EST: gi|213599808|gb|DB968430.1|DB968430
EST:     AGCTACACCAGAGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAG                         CATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG
genomic: AGCTACACCAGAGACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgtgacttggt ... gtggtttcagCATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGG