Sequence
atgc intronic sequence ATGC exonic sequenceCTACATTCAAACCAATGGCAAAACTCTTGGTGCCGACGACAACATCAATGAGTTTGGTTGGGACAACAAACATGCTGGCCTCAACGTACTTGTCTCTAAGgtcagcctcatattattacttcaacactaagtacaaccacaaccttaaattcacaaaatttcatgtcatctgaactatatacacatcattcacattttca...
Basic information
species | Glycine max |
transcript | GLYMA11G11910.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G11910.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G048165_T01 (Zea mays), 5'ss of exon 3
CTACATTCAAACCAATGGCAAAACTCTTGGTGCCGACGACAACATCAATGAGTTTGGTTGGGACAACAAACATGCTGGCCTCAACGTACTTGTCTCTAAGgtcagcctcatattattacttc-aacactaagtacaaccacaaccttaaattcacaaaatttcatgtcatctgaactatatacacatcattcacattttca------------------
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GTACATTCAGAACAACGGCAAGACCCTGGGTGCAGAGGACAGCAGCAACGAGTTCGGGTGGGACAACAAGCATGCCGGCCTCAACGTCCTCGTCTCCAAGgtta-ttttacggggctgcttccatcgcaccccccccccttcaatccacgaatgcaaattacgctggcaaatcaacagagcagaactgacttgtatgggggaatttgactgcattgcag
upper sequence: GLYMA11G11910.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g00630.t01 (Vitis vinifera), 5'ss of exon 3
CTACATTCAAACCAATGGCAAAACTCTTGGTGCCGACGACAACATCAATGAGTTTGGTTGGGACAACAAACATGCTGGCCTCAACGTACTTGTCTCTAAGgtc--agcctcatattattact-tcaacactaag-tacaaccacaaccttaaattcacaaaatttcatgtcatctgaactatata-cac---atcattcacattttca-----------------------------------------------------------------------
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TTATATAGAAAACAATGGCAAAACGCTTGGAGCAGAGGACAATATCAACGAATTCGGTTGGGACAACAAGCATGCTGGCCTCAACGTTTTGGTCTCAAAGgtacgaagttcatttcaaagttaccaactcttgtcttcatcaacaaaaaaataaatgaataatggtacggtacttgggttatggatcattcaataattgagattttttttttttgtgctatttttgtttcttttgaattttttcaaccaaatattccttgtgtggtcacgctctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27427389|gb|CA938909.1|CA938909EST: AGTTTGGTTGGGACAACAAACATGCTGGCCTCAACGTACTTGTCTCTAAG GAAGTCATAGAAGGAAACATGTACTCTCTTGAGTCCTACAAGTCCTCAGCA
genomic: AGTTTGGTTGGGACAACAAACATGCTGGCCTCAACGTACTTGTCTCTAAGgtcagcctca ... atttttatagGAAGTCATAGAAGGAAACATGTACTCTCTTGAGTCCTACAAGTCCTCAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTACATTCAAACCAATGGCAAAACTCTTGGTGCCGACGACAACATCAATGAGTTTGGTTGGGACAACAAACATGCTGGCCTCAACGTACTTGTCTCTAAGgtcagcctcatattattacttcaacactaagtacaaccacaaccttaaattcacaaaatttcatgtcatctgaactatatacacatcattcacattttca
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