Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGGCTTGTTGTATATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAGgttattccattgtccatgactgttgaatgaatgatttttttaatgtaatgcaacttgcaacgccttttgcatcaactttagttgaagtctgtatgtactc...

Basic information

species Glycine max
transcript GLYMA11G11670.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 2
lower sequence: AT4G28510.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGTGGGCTTGTTGTATATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAGgttattccattgtccatgactgttgaatgaatgatttttttaatgtaatgcaacttgc-aacgccttttgcatcaactttagttgaagtctgtatgtactc---
||||||||||| | | ||||| ||| |  ||||  | ||||||||||| ||||| |||||||||||  | ||||||||| | |||||| | ||||||||||||| ||  |  | | | |   | |      |    |||| | |  |||| |  || | || |  ||||   |   || |   |||  | || ||| | |    
TGGTGGGCTTGGTCTCTATGGTGCTACGCACAGTCTCTACAATGTTGAAGGAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagtgtttcttcaaattgggtctttttggattttcagta-aatgtattttcccaatgagtttt---tttgctgtttgtgagatttggatgaaattttc

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 2
lower sequence: AT2G20530.2 (Arabidopsis thaliana), 5'ss of exon 3
TGGTGGGCTTGTTGTATATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAGgttattccattgtccatgactgttgaatgaatgatttttttaatg-taatgcaacttgcaac---gccttttgcatcaactttagttgaagtctgtatgtactc
||| |||||   | | || || ||| |  |||   | |||||||| || ||||||||||||||||||||||| || ||  |||| ||| ||||||| ||||||| ||| |   | |  | || |   |     || | | || ||  |||| | ||||       | | | |   | || ||  |||    |  | || |||| 
TGGGGGGCTCAGTCTTTACGGTGCTACGCACACTCTCTACAATGTCGATGGAGGTCATCGAGCCATTGTCTTTAACCGGCTTGTTGGTATCAAAGACAAGgttagtccct--gcaaaaattggtttcttctgaatctgtatattgacaatgaatcttgtggttgtgacatctagctgaagttaggttaggcttagcat-tact-

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0048g02350.t01 (Vitis vinifera), 5'ss of exon 3
TGGTGGGCTTGTTGTATATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAGgttattccattgtccatgactgttgaatgaatgatttttttaatgtaatgcaacttgcaacgccttttgcatcaactttagttgaagtctgtatgtactc-
|||||||||||   | ||||| |||   |||||  ||||||||||||||||||| ||||| |||||||| || |||||  |  | |||||||||||||||||| |    |   |   |  | ||| ||    ||  |        | |    | ||    | |   ||  ||    |||  | |     ||  | ||    
TGGTGGGCTTGGATTGTATGGAGCTATTAACAGTCTGTACAATGTTGAGGGAGGCCATCGGGCCATTGTGTTTAATCGCATAATTGGTGTCAAAGATAAGgttctcatttccccttggtttcttgcatatgagacctaaaatccattaaattatttttgtctctacttatat-ggtttttttgggtaattgcttttagatt

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0085g00730.t01 (Vitis vinifera), 5'ss of exon 3
TGGTGGGCTTGTTGTATATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAGgttattccattgtccatgactgttgaatgaatgatttttttaatgtaatgcaacttgcaacgccttttgcatcaactttagttgaagtctgtatgtactc
||||||||||| | | ||||| |||   |||||  ||||||||||||||||||||||||| |||||||| || |||||  | || |||||||| || |||||| |    |   |   |  | ||| ||    ||  |        | |    | ||    | |   ||  ||    ||| |   || |   | |  | | 
TGGTGGGCTTGGTTTGTATGGAGCTATTAACAGTCTGTACAATGTTGAGGGAGGTCATCGGGCCATTGTGTTTAATCGCATAGTTGGTGTCAAGGACAAGgttctcatttccccttggtttcttgcatatgagacctgaaatccattaaattatttttgtctctgcttatatggttttttgggtaattgcttttagattt

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S41_59V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTGGGCTTGTTGTATATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAGgttattccattgtccatgactgttgaatgaatgatttttttaatgtaatgcaacttgcaacgccttttgcatcaactttagttgaagtctgta-tgtactc-----------------
 |||||  |||  || ||||  || |  |||   ||||||||||| |||||||| || ||||||||||| || |||||  |||| |||||||| |||||||| | |   |      ||| |||  | || ||   | |||  |||  | | || ||| |     ||| |  |     ||  |||| |   ||   | | |                  
CGGTGGCATTGGGGTGTATGCTGCGGTCAACTCGTTGTACAATGTGGAGGGAGGGCACCGAGCCATTGTGTTTAATCGCATTGTAGGTGTCAAGGATAAGgtgagtgagtga---gtgagtgtgaattgcattggtcttt-gatgagacggaatttggatttgttttagggtttggatt--ttgacgatcgtggcggatttcgaggatggccttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330517|gb|GR841782.1|GR841782
EST:     GAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAG                         GTCTATCCTGAAGGGACACATATTATGAGTCCTTGGTTCGAGAGGCCTGTG
genomic: GAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAGgttattccat ... ttgaatgcagGTCTATCCTGAAGGGACACATATTATGATTCCTTGGTTCGAGAGGCCTGTG
EST: gi|213608413|gb|DB972671.1|DB972671
EST:     GAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAG                         GTCTATCCTGAAGGGACACATATTATGATTCCTTGGTTCGAGAGGCCTGTG
genomic: GAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAGgttattccat ... ttgaatgcagGTCTATCCTGAAGGGACACATATTATGATTCCTTGGTTCGAGAGGCCTGTG
EST: gi|17962874|gb|BM269622.1|BM269622
EST:     GAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAG                         GTCTATCCTGAAGGGACACATATTATGATTCCTTGGTTCGAGAGGCCTGTG
genomic: GAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAGgttattccat ... ttgaatgcagGTCTATCCTGAAGGGACACATATTATGATTCCTTGGTTCGAGAGGCCTGTG
EST: gi|192326312|gb|FK017644.1|FK017644
EST:     GAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAG                         GTCTATCCTGAAGGGACACATATTATGATTCCTTGGTTCGAGAGGCCTGTG
genomic: GAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAAGATAAGgttattccat ... ttgaatgcagGTCTATCCTGAAGGGACACATATTATGATTCCTTGGTTCGAGAGGCCTGTG