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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAGAAGATCTCTCTGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCAACAGGAGTTCAGgtaaattgtcagtgaagtacctaaatttagaggatgattatattatatggtccttttggatagtcataaatcatttggccacagatgcctttagtgagcaagtgtgtgtatgttgacattattctttgtttcag

Basic information

species Glycine max
transcript GLYMA11G11490.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11490.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G374574_T02 (Zea mays), 5'ss of exon 3
TTTGAAGAAGATCTCTCTGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCAACAGGAGTTCAGgtaaattgtcagtgaagtacctaaatttagaggatgattatattatatggtccttttggatagtcataaatcatttggccacagatgcctttagtgagcaagtgtgtgtatgttgacattattctttgtttcag
  | |||||||||||||||||||| || ||||||||  | ||||| ||||| || ||||| || || || ||| | |||||||| || || || ||||||||    |  |  |||  | | || |         |  |||| || |    |  ||     || | | |  || |         || |   ||  ||                                      
CCTTAAGAAGATCTCTCTGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCCCTAATGGCTGTTCTATCGTATCTCGACTTCTTCTCCACTGGGGTTCAGgtcgggt-cctctgatctccttacaaccg-----ttcttatcttgtgcactgtttgcatctacttacacctcttcccatgggggacgtacttgttgtag-----------------------------------

upper sequence: GLYMA11G11490.2 (Glycine max), 5'ss of exon 2
lower sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 2
TTTGAAGAAGATCTCTCTGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCAACAGGAGTTCAGgtaaattgtcagtgaagtacctaaatttagaggatgattatattata-tggtccttttggatagt-cataaatcatttggccacagatgcctttagtgagcaagtgtgtgtatgttgacattattctttgtttcag
| | || ||||| |||| |||||| || ||||||||  | ||||| |||||||||||||| ||||| || ||| |||| ||||| || || || ||||||||   |        || |  |||| ||          ||||  || | |    | | |   || | || |  | | |||||  |   |                                                
TCTCAAAAAGATATCTCAGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCTCTTATGGCTGTGCTCTCGTATCTGGATTTCTTCTCCACTGGTGTTCAGgtgggt--------aaatttctaacttct-----cttttatgctacacttactcgtgtatctaatgcacatgttacttggcttcttgtag----------------------------------------------

upper sequence: GLYMA11G11490.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 2
TTTGAAGAAGATCTCTCTGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCAACAGGAGTTCAGgtaaattgtcagtgaagtacctaaatttagaggatgattatattatatggtccttttgg-atagtcataaatcatttggccacagatgcctttagtgagcaagtgtgtgtatgttgacattattctttgtttcag
| |||||||||| || | |||||| || ||||||||  | |||||||||||||| ||||| |||||||||| | | ||||||||  ||||||| ||||||||||| | |  |  |  |||    ||   | |     |  | || |  || | | |||| ||  |  | ||  | ||     |  |||  || ||                                        
TCTGAAGAAGATATCCCAGGAGCAGCCTACTGCCTGTTTGCGAGCAGGTGCTCTAATGGCAGTGCTTTCTTTTCTTGACTTCTTCCCAACAGGTGTTCAGgtaaaattttggctatttactcgtatgctgtgctccttggtcttctggggccatattgggatttttctgaagaagtttatttcc-atgttttcag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207690591|gb|GD672075.1|GD672075
EST:     CTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCAACAGGAGTTCAG                         CGGGTTGCATTGTCTACTGCTGCAAATATGTG
genomic: CTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCAACAGGAGTTCAGgtaaattgtc ... tttgtttcagCGGGTTGCATTGTCTACTGCTGCAAATATGTG