Sequence
atgc intronic sequence ATGC exonic sequenceGAGAGGTTCGCTAAGCTGCTTCTGGGAGAGGATATGTCTGGTGGTGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACCAATCTCTCTGgttagtgactctctcatgtgctaattaactaattaatttgcacaatgtcgttgataaaatttgactaccagcacttgtaaaagaagaaaaataacatgtt...
Basic information
species | Glycine max |
transcript | GLYMA11G10330.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G10330.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G38430.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGAGGTTCGCTAAGCTGCTTCTGGGAGAGGATATGTCTGGTGGTGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACCAATCTCTCTGgttagtgactctctcatgtgctaatta-actaattaatttgcacaatgtcgttgataaaatttgactaccagcacttgtaaaagaagaaaaataacatgtt
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GAGAGATTTGCTAAGCTACTTCTCGGGGAAGACATGTCTGGTGGAGGTAAAGGGGTTTGTACGGCGCTTGCTATCTCCAACGCCATCACCAATCTCTCTGgt-accatctcaatcttcttccctttttgttagttggtatatatagtaggggtttctagtttt--ttaataaggctagtgtccacacag------------
upper sequence: GLYMA11G10330.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g03620.t01 (Vitis vinifera), 5'ss of exon 3
GAGAGGTTCGCTAAGCTGCTTCTGGGAGAGGATATGTCTGGTGGTGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACCAATCTCTCTGgttagtgactctctcatgtgctaattaactaattaatttgcacaatgtcgttgataaaatttgactaccagcacttgtaaaagaagaaaaataacatgtt------
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GAGAGATTTGCTAAGCTTCTACTTGGGGAAGATATGTCTGGAGGAGGGAAAGGGGTTTGTACTGCCCTTGCCATCTCAAACGCCATCACAAATCTCTCTGgttagt-----ttgca-gtctctttctgttacttatcctgtgtatggttcctgagaaaatggaggaaaaggaaagaactagatgttttcagtgttgtgtttcctgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298171435|gb|HO016467.1|HO016467EST: AGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACCAATCTCTCTG CAACTGTGTTTGGCGAACTGTGGAGGTTAGAGCCGCTGGCGCCACAGAAGA
genomic: AGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACCAATCTCTCTGgttagtgact ... gtgattgcagCAACTGTGTTTGGCGAACTGTGGAGGTTAGAGCCGCTGGCGCCACAGAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGAGGTTCGCTAAGCTGCTTCTGGGAGAGGATATGTCTGGTGGTGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACCAATCTCTCTGgttagtgactctctcatgtgctaattaactaattaatttgcacaatgtcgttgataaaatttgactaccagcacttgtaaaagaagaaaaataacatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaataa