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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGTGCCAACTGATAACTCCGTGGACATTCTCACAAATGATATTGGTGTTGTTGTTGTTACCGATGACGATGGGGAGCCTCAAGGGTTCAACATATATgtaagaataggatggatgtagataacagttgagtgattttttttttctttttctaccatttttctaactgggaccttctaattactcttgcag

Basic information

species Glycine max
transcript GLYMA11G09890.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09890.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g02330.t01 (Vitis vinifera), 5'ss of exon 2
TACTGTGCCAACTGATAACTCCGTGGACATTCTCACAAATGATATTGGTGTTGTTGTTGTTACCGATGACGATGGGGAGCCTCAAGGGTTCAACATATATgtaagaataggatggatgtagataacagttgagtgattttttttttctttttctaccatttttctaactgggaccttctaattactcttgcag
|||||||||||| |||||||| ||||| ||| ||||||||||| ||||||||||||||||| | ||||   |||| |||||||  || ||||| || ||||| |||  |  ||  |      ||  | ||   |  |||| || |||  |||     | | || ||| ||    ||  |||||  | ||||||
TACTGTGCCAACAGATAACTCGGTGGATATTTTCACAAATGATGTTGGTGTTGTTGTTGTTTCTGATGCTAATGGAGAGCCTCTGGGTTTCAATATCTATgtgagataaacattcactc---tactaatt---tacttttcttattccattttgg--agtcttataattg---tctgttaatttttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533624|gb|EH261757.1|EH261757
EST:     AGCCTCAAGGGTTCAACATATAT                         GTTGGTGGTGGAATGGGAAGAACTCATAGGTTGGAAACCACTTTTCCTCGC
genomic: AGCCTCAAGGGTTCAACATATATgtaagaatag ... actcttgcagGTTGGTGGTGGAATGGGAAGAACTCATAGGTTGGAAACCACTTTTCCTCGC
EST: gi|21678099|gb|BQ630450.1|BQ630450
EST:     TTGTTGTTGTTACCGATGACGATGGGGAGCCTCAACGGTTCAACATATAT                         GTTGGGGGCGGAATGGGGAGAACTCATAGGTTGGAAACCACTTTTCCTCGC
genomic: TTGTTGTTGTTACCGATGACGATGGGGAGCCTCAAGGGTTCAACATATATgtaagaatag ... actcttgcagGTTGGTGGTGGAATGGGAAGAACTCATAGGTTGGAAACCACTTTTCCTCGC
EST: gi|208152974|gb|GD949617.1|GD949617
EST:     TTGTTGTTGTTACCGATGACGATGGGGAGCCTCAAGGGTTCAACATATAT                         GTTGGTGGTGGAATGGGAAGAACTCATAGGT-GGAAACCACTTTTCCTCGC
genomic: TTGTTGTTGTTACCGATGACGATGGGGAGCCTCAAGGGTTCAACATATATgtaagaatag ... actcttgcagGTTGGTGGTGGAATGGGAAGAACTCATAGGTTGGAAACCACTTTTCCTCGC
EST: gi|15662333|gb|BI699704.1|BI699704
EST:     TTGTTGTTGTTACCGATGACGATGGGGAGCCTCAAGGGTTCAACATATAT                         GTTGGTGGTGGAATGGGAAGAACTCATAGGTTGGAAACCACTTTTCCTCGC
genomic: TTGTTGTTGTTACCGATGACGATGGGGAGCCTCAAGGGTTCAACATATATgtaagaatag ... actcttgcagGTTGGTGGTGGAATGGGAAGAACTCATAGGTTGGAAACCACTTTTCCTCGC
EST: gi|254326624|gb|GR841216.1|GR841216
EST:     GGGGAGCCTCAAGGGTTCAACATATAT                         GTTGGTGGTGGAATGGGAAGAACTCATAGGTTGGAAACCACTTTTCCTCGC
genomic: GGGGAGCCTCAAGGGTTCAACATATATgtaagaatag ... actcttgcagGTTGGTGGTGGAATGGGAAGAACTCATAGGTTGGAAACCACTTTTCCTCGC