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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGATGCCATGGGGATGAACATGGTCTCCAAAGGAGTCCAAAACGTGCTTACTTTTCTCCAGAGTGATTTTCCAGATATGGATGTTATTGGGATATCTGgtaattaattaaattaaattaaacatggcatgacatcacccttctttgctttattcattaaggtcaaagttgatgtcacgatgaattaagaattggaacatatttatgtaacag

Basic information

species Glycine max
transcript GLYMA11G09330.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09330.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0044g01740.t01 (Vitis vinifera), 5'ss of exon 3
GGGGATGCCATGGGGATGAACATGGTCTCCAAAGGAGTCCAAAACGTGCTTACTTTTCTCCAGAGTGATTTTCCAGATATGGATGTTATTGGGATATCTGgtaattaattaaattaaattaaacatggcatgacatcacccttctttgctttattcattaaggtcaaagttgatgtcacgatgaattaagaattggaacatatttatgtaacag
|| ||||| ||||| |||||||||||||||||||||||||||||||| ||   ||| || || |  ||||| || || |||||||| || || || || |||||           || || ||| ||||| |||     |   |  |||   || |||    |  ||||||    ||    ||||| ||   ||   |         |      
GGTGATGCAATGGGTATGAACATGGTCTCCAAAGGAGTCCAAAACGTCCTGGATTTCCTTCAAACCGATTTCCCTGACATGGATGTCATCGGCATCTCCGgtaa-----------aattttaac-tggca-gaccaattctaccaatgcccgatgcat----gctaaagtttgaatccatctgaatcaatgtttttgaatcgccccag------

upper sequence: GLYMA11G09330.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ10313 (Selaginella moellendorffii), 5'ss of exon 2
GGGGATGCCATGGGGATGAACATGGTCTCCAAAGGAGTCCAAAACGTGCTTACTTTTCTCCAGAGTGATTTTCCAGATATGGATGTTATTGGGATATCTGgtaattaattaaattaaattaaacatggcatgacatcacccttctttgctttattcattaaggtcaaagttgatgtcacgatgaattaagaattggaacatatttatgtaacag
|| || || ||||||||||||||| ||||||| || |||||||||||  |    | ||| ||   ||  || || || |||  ||||||  |  | ||||||||   |||   || ||     | || |      ||    ||     |||   |    |                                                      
GGTGACGCAATGGGGATGAACATGATCTCCAAGGGGGTCCAAAACGTTTTGGACTATCTTCACGATGTATTCCCCGACATGTGTGTTATCAGCGTCTCTGgtaa---atttccttgaagatgtcttgtcccttggtctgagttgcaaacttgtcttcccag-----------------------------------------------------

upper sequence: GLYMA11G09330.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ19556 (Selaginella moellendorffii), 5'ss of exon 2
GGGGATGCCATGGGGATGAACATGGTCTCCAAAGGAGTCCAAAACGTGCTTACTTTTCTCCAGAGTGATTTTCCAGATATGGATGTTATTGGGATATCTGgtaattaattaaattaaattaaacatggcatgacatcacccttctttgctttattcattaaggtcaaagttgatgtcacgatgaattaagaattggaacatatttatgtaacag
|| || || ||||||||||||||| ||||||| || |||||||||||  |    | ||| ||   ||  || || || |||  ||||||  |  | ||||||||   |||   || ||     | || | |    ||    ||     |||   |    |                                                      
GGTGACGCAATGGGGATGAACATGATCTCCAAGGGGGTCCAAAACGTTTTGGACTATCTTCACGATGTATTCCCCGACATGTGTGTTATCAGCGTCTCTGgtaa---atttccttgaagatttcttgtcctttggtctgagttgcaaacttgtcttcccag-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401231|gb|BM178013.1|BM178013
EST:     TACTTTTCTCCAGAGTGATTTTCCAGATATGGATGTTATTGGGATATCTG                         GGAATTTCTGTTCGGATAAGAAGGCTGCGGCTGTGAACTGGATTGAGGGGA
genomic: TACTTTTCTCCAGAGTGATTTTCCAGATATGGATGTTATTGGGATATCTGgtaattaatt ... tatgtaacagGGAATTTCTGTTCGGATAAGAAGGCTGCGGCTGTGAACTGGATTGAGGGGA