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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttcttttctctctcctaaaaactaaattttgggttctgggtaattctccaattccgcatattttgaataaattcagctacgtttgcatttaatct...

Basic information

species Glycine max
transcript GLYMA11G08380.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g02840.1 (Oryza sativa), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttcttttctctctcctaaaaactaaattttgggttctgggtaattctccaattccgcatattttgaataaattcagctacgtttgcatttaatct-------
||||||||| || |||||||| ||||||||||| || ||||| || || || ||||| |||||| |||| || |||||||||  |||||| |||||||| ||  ||  | ||||   || |      |    ||     ||     | |||      | |   |  ||    |   ||  ||| | | |   ||||||         
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACCGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTCCTACACCTCCAACACCTTCCCCACTgtgcgtattcttcttcttcttc----ttcttcttcttcctccaaacatttccttttcttcttcttcttc---tttcttttgcttcttctttttttaattatttttga

upper sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G803949_T01 (Zea mays), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttcttttctctctcctaaaaactaaattttgggttctgggtaattctccaattccgcatattttgaataaattcagctacgtttgcatttaatct------------
||||||||| || |||||||| ||||||||||| || ||||| || || || ||||| |||||| |||| ||||||||||||  |||||| |||||||||||  |  | |    ||||   |     | ||||||   |||||||          | ||| |  |||||||||   | | ||  || |     |  ||||            
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACGGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATTTCCTACACCTCCAACACCTTCCCCACCgtacgcccctcctcctctg--acggtttcaatttttttttctgggggg-------agtccccggattttgaat---tgcggcggcggtcttgatcgatctggggcgcgctgg

upper sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G846811_T01 (Zea mays), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttcttttctctctcctaaaaactaaattttgggttctgggtaattctccaattccgcatattttgaataaattcagctacgtttgcat--ttaatct
||||||||| || |||||||| ||||||||||| || ||||| || || || ||||| |||||| |||| || |||||||||  |||||| |||||||||||  | || || |||     |          |   | | | |   |  || |         |   |   | ||   || |  | ||   || |  || ||| 
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACGGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTCCTACACCTCCAACACCTTCCCCACCgtacgctccttcctcctcattgttgctccgctggagaggtttcatttttttttggggggtcccggtccgggatt--ttgaattgcgacggcgttcttgatcg

upper sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G51300.1 (Arabidopsis thaliana), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttcttttctctctcctaaaaactaaattttgggttctgggtaattctccaattccgcatattttgaataaattcagctacgtttgcatttaatct-
 ||||||||||| |||||| | |||||||| || ||||| ||||| ||||| || ||||| || ||| | ||||| ||||| |||||||||||||| || ||||  ||     | |    | |    |   | |||   | |   ||   |  |||  |  ||||| |   ||   |   | | | ||||    ||  |  
AATGAGCGCTTCGAGGTTCGTAAAGTGCGTGACGGTTGGTGATGGAGCTGTCGGAAAAACTTGTTTGTTGATTTCTTACACAAGCAACACTTTCCCTACGgttatgtcccaattattctttca----tgtttcttg---tttcattaccacaacaa--caacatatctc--atgtttcttgtttcttttgtggatatacag

upper sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 2
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttcttttctctctcctaaaaactaaattttgggttctgggtaattc----tccaattccgcatatt---ttgaataaattcagctacgtttgcatttaatct--------------------------------------------------------------------------------------
 ||||||||||| |||||||| ||||| ||||| ||||| || || ||||| || |||||||| ||||| ||||| ||||||||||||||||| || || ||    | ||   ||  |      ||  | ||| || |||||| | | | |    | |||    |  |  |   |||| | |    | | | | |||     |  |                                                                                       
AATGAGCGCTTCGAGGTTCATAAAGTGTGTCACCGTTGGCGACGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTTACACCAGCAACACTTTTCCTACGgtataatgttccttccttagattgaatcatattctgtgttctgtgaattacaagcttcaaaattgtcttctctattgattgatgagaccaaagcttgtggcaatacatgaatcgatccataatttttttttggtgttatgaggatttgtggagctttgtatctcattgaatcttgtaaattcatgtggaacag

upper sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCAC------Cgttagttcttttctctc----tcctaaaaactaaatt-ttgggttctgggta----attctccaatt-----ccgcatattttgaataaattcagctacgtttgcatttaatct-
 |||||||| || |||||||| ||||||||||| ||||| ||||| ||||| || |||||||| ||||| ||||| || ||||||||||| || |||||      | | | |  || || |||    |  | | | || | |  || | |||||  |     ||     ||||     ||  | ||  | || ||  |    ||| ||| ||||  | |  
AATGAGCGCATCAAGGTTCATAAAGTGCGTCACCGTTGGTGATGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTTATACCAGCAACACCTTTCCCACGgtattcatcaatcattctccctcctttttttgatatctgattcatttgattctgattgtgccatatatgaattgggatccatacatactaaa-aatgttgtatacatttccattggaacag

upper sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 2
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttct--tttctctctcctaaaaactaaattttgggttctgggtaattctccaattccgcatattttgaataaattcagctacgtttgcatttaatct-
 ||||| ||||| ||||||||||||||||||||||| ||||||||||| || |||||||| ||  | ||||| ||||| |||||||||||||||||||| || ||| ||  |||| |    ||| |   |    ||||||  |  ||  |||      ||        |  | || |  |     |  |||   | |    | 
AATGAGTGCTTCAAGGTTCATCAAGTGCGTCACTGTAGGGGATGGTGCCGTTGGCAAAACTTGTCTCCTTATCTCCTATACCAGCAACACTTTCCCCACGgtgagtcctcatttcccatatctagagtttcctatttgggcccgtggagattaggggctttattcccctccggatgatgtggaagaaattt---tctggcttt

upper sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S51_114V6.1 (Physcomitrella patens), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttcttttctctctcctaaaaactaaattttgggttctgggtaattctccaattccgcatattttgaataaattcagctacgtttgcatttaatct
 |||||| ||||  |||| ||||||||||| |||||||| ||||| ||||| || || || ||| |||||||||| |||||||||||||| || || || || ||         ||     |       |   |  || |  | ||   | ||| |     |||    |   | ||| |  | ||           ||||
-ATGAGCACTTCACGGTTTATCAAGTGCGTGACTGTTGGAGATGGAGCTGTCGGGAAGACGTGCATGCTTATTTCATACACCAGCAACACATTTCCTACTgtaagcaacgactgcttgtggagtggtctatcatctggataggtgttggtttcctaagtttcattcggttgctgaatccctcaacaagaattacggatct

upper sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S126_126V6.2 (Physcomitrella patens), 5'ss of exon 2
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttcttttctctctcctaaaaactaaattttgggttctgggtaattctcc-aattccgcatattttgaataaattcagctacgtttgcatttaatct------
 |||||| | ||  |||||||||||||||| ||||| || ||||| ||||| || || |||||| |||| || || || |||||||| || ||||| || || ||       | ||     || |       |     ||| || ||  |||   |  | | || || |||   |  ||| |   | ||  | |  |||||      
CATGAGCACCTCCCGGTTCATCAAGTGCGTAACTGTCGGAGATGGAGCTGTCGGGAAGACCTGCATGCTCATCTCATATACCAGCAATACATTCCCTACTgtaagcgacaaccgcttgtggaatag------tgcacattccggataggtcttttagcttcacaaatcttgtccagtttctgaatccttcacgta-aatcttgcgga

upper sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S257_74V6.1 (Physcomitrella patens), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttcttttctctctcctaaaaactaaattttgggttctgggtaattctcc--aattccgcatattttgaataaattcagctacgtttgcatttaatct
 |||||| ||||| | || ||||||||||| ||||| || ||||| |||||||| || || ||| |||||||||| || |||||||| || || || || || || |    |      |  |    |   ||    |  |  |  | | | | |  |  | | | || | ||||    ||  |   ||     ||    | |
CATGAGCACTTCTCGCTTTATCAAGTGCGTTACTGTAGGAGATGGAGCTGTGGGGAAGACGTGCATGCTTATTTCATATACCAGCAATACATTTCCTACTgtaagctgcgatagtctccgaactggcattatccctgaataggtttcagttttcttagcttcccttactctgaacccttttcgggtcgc--agatccgcttt

upper sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ04304 (Selaginella moellendorffii), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttcttttctctctcctaaaaactaaattttgggttctgggtaattctccaattccgcatattttgaataaattcagctacgtttgcatttaatct
 |||||| |||| ||||| || || || |||||||| || ||||| || || |||||||| ||| |||| ||||| ||||| ||||||||||| || || || || | |||||| |||| | | |    |||| |         || | | ||  |||||                                        
-ATGAGCACTTCCAGGTTTATTAAATGTGTCACTGTGGGAGATGGGGCCGTCGGCAAAACATGCATGCTAATTTCTTACACAAGCAACACTTTTCCTACTgtgagattttttct-tctctttagatgggaattctaacc-----gtgaatgtctgattccag--------------------------------------

upper sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ16760 (Selaginella moellendorffii), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttcttttctctctcctaaaaactaaattttgggttctgggtaattctccaattccgcatattttgaataaattcagctacgtttgcatttaatct
||||||| |||| ||||| || || || |||||||| || ||||| || || |||||||| ||| |||| ||||| ||||| ||||||||||| || || || || | |||||| |||| | | |    |||| |         || | | ||  |||||                                        
GATGAGCACTTCCAGGTTTATTAAATGTGTCACTGTGGGAGATGGGGCCGTCGGCAAAACATGCATGCTAATTTCTTACACAAGCAACACTTTTCCTACTgtgagattttttct-tctctttagatgggaattctaacc-----gtgaatgtctgattccag--------------------------------------

upper sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ09765 (Selaginella moellendorffii), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttag------ttcttttctctctcctaaaaactaaattttgggttctgggtaattctccaattccgcatattttgaataaattcagctacgtttgcatttaatct
 |||||| |||| || || ||||||||||| || || || |||||||| |||||||| || ||| |||| ||||| ||||| ||||||||||||||||| || ||      || | |||| ||   |       |   | | ||    || |  |||  |||                                            
CATGAGCACTTCAAGATTTATCAAGTGCGTTACCGTCGGAGATGGTGCGGTGGGCAAGACTTGCATGCTCATTTCATACACGAGCAACACTTTCCCCACTgtgagatttcgttttgttctttcctttttctctaactctcttgggctgggatcgttcatcaacag-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5606072|gb|AI900170.1|AI900170
EST:     TGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACC                         GATTATGTGCCGACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCAAT
genomic: TGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttctt ... ttaaaaacagGATTATGTGCCGACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCAAT
EST: gi|58017044|gb|CX703786.1|CX703786
EST:     TACACCAGCAACACTTTCCCCACC                         GATTATGTGCCGACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCAAT
genomic: TACACCAGCAACACTTTCCCCACCgttagttctt ... ttaaaaacagGATTATGTGCCGACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCAAT
EST: gi|19054119|gb|BM732786.1|BM732786
EST:     TGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACC                         GATTATGTGCCGACTGTTTTTGACAATTTCAGCGCAAATGTGGTTGTCAAT
genomic: TGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttctt ... ttaaaaacagGATTATGTGCCGACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCAAT
EST: gi|58016803|gb|CX703545.1|CX703545
EST:     GGCAAAACCTGCTTGCTTATTTCTTACACCAGCAACACTTTCCCCACC                         GATTATGTGCCGACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCAAT
genomic: GGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCgttagttctt ... ttaaaaacagGATTATGTGCCGACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCAAT