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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAATCTGATGAGAATGGACCTCCACAGgcaagcatatgttactatgcatattaatctgtagtgcatgagtactctaccatttattcttttacgcgctttgacttttgttaccaacttagtaatttga...

Basic information

species Glycine max
transcript GLYMA11G07990.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07990.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G18060.1 (Arabidopsis thaliana), 5'ss of exon 2
GACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAATCTGATGAGAATGGACCTCCACAGgcaagcatatgttactatgcatattaatctgtagtgcatgagtact--ctaccatttattcttttacgcgctttgacttttgttaccaacttagtaatttga----
 || ||||| |||||||||||| | || ||||||||  |||||   |||||||||||||| |||||  |||| || || |||||||||| ||| || |||| |  | | |||| |||      |        |     |  ||  |   ||    || || | |   | |||    |||| || |   || |  ||| ||      
AACACTTGTGTTCTACAAAGGACGTGCACCTAATGGCAAGAAATCCGATTGGATCATGCATGAGTACCGGCTCGAGTCAGATGAGAATGCACCGCCCCAGgta--cttgtgtttctactttggtggggacaaaacatttttgttttaattagggcttcttgtctcttgggct----ctttcgtgaggcacatgctaacttttaggt

upper sequence: GLYMA11G07990.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G36160.1 (Arabidopsis thaliana), 5'ss of exon 3
GACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAATCTGATGAGAATGGACCTCCACAGgcaagcatatgttactatgcatattaatctgtagtgcatgagtactctaccatttattcttttacgcgctt----tgacttttgttaccaacttagtaatttga
 || ||||| |||||||||||||||||||||||||| || ||||  |||||||||||||| || ||  |||| || || |||||||||| |||||| |||| |  |   | ||||  || |||| | | || | | |||   |        | || || |  ||   | |     | | |||| |   | ||   | | |    
AACACTTGTGTTCTACAAAGGAAGAGCCCCTAATGGCCAAAAAACCGATTGGATCATGCATGAATACCGGCTAGAGTCAGATGAGAATGCACCTCCTCAGgtattctcgttttacc-tg-atatcattttgaaatacatagatttgaggataattgttatactagatgttcaatctaaattttatcctctaccgggaattac--

upper sequence: GLYMA11G07990.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03110.t01 (Vitis vinifera), 5'ss of exon 2
GACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAATCTGATGAGAATGGACCTCCACAGgcaagcatatgttactatgcat--attaatctgtagtgcatgagtactctaccatttattcttttacgcgctttgacttttgttaccaacttagtaatttga--
    || || || ||||||||  |||| || ||||| ||||||| ||| ||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||| |||   | |  |   |  | ||||   |    | |    |   | | |  | ||   |  |   |  | | |    ||| | | | |||    ||   
----CTCGTCTTTTACAAAGGGCGAGCGCCCAATGGGCAGAAAACTGACTGGATTATGCACGAGTACAGGCTCGAATCGGAAGAGAATGGACCTCCACAGGCAAgtataaccttcctttttttgactaattaatcaacccttgccatcatgcaacctctttcctgtctttcaatcattccatttagccattaagtgggatgttt