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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgcatatgatttatggcttaacttactgtcatttatgttttctattattgtttgaacttgcactagcaattgactgtctgcttcgggcaggttactactatctgttgctttgcctttgtgaggctcctgttgttttattttttgaaagatgcatttgtttttatcttgagttcttctacttaatgcacatgcag

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G51130.1 (Arabidopsis thaliana), 5'ss of exon 2
GGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgcatatgatttatggcttaacttactgtcatttatgttttctattattgtttgaacttgcactagcaattgactgtctgcttcgggcaggttactactatctgttgctttgcctttgtgaggctcctgttgttttattttttgaaagatgcatttgtttttatcttgagttcttctacttaatgcacatgcag
| ||||| || ||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| || || |  || |||||||||   |  | |   || |  | |  |||| || |||||      |||  |  ||     |||   |  | ||        ||| ||  ||||                                                                                                        
GAATGCCGATTTGTGAAGCATTTGCTCAAATAGAGCAGCAGCCTAACATATATGATGTTGTTCATGTTAAATACTACGACGAGgtttgtactaggtcacggattgtattagatact-tcttttatccaacttatcttcattgtttgttgagttttctatgattccgttgcctcatgcag--------------------------------------------------------------------------------------------------------

upper sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 2
GGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgcatatgattta-tggcttaacttactgtcatttatgttttctattattgtttgaacttgcactagcaattgactgtctgcttcgggcaggttactactatctgttgctttgcctttgtgaggctcctgttgttttattttttgaaagatgcatttgtttttatcttgagttcttctacttaatgcacatgcag
||||||| || |   |||| |||||||| |||||||| || |||||||| |||||||| || || |||||||||||||| ||||| ||   |||  |||||| |     | | |  |||||| ||  || |  |  ||  ||||  |       | |  |||  ||      |    || | |                                                                                                     
GGATGCCGATCTCCAAAGCGTTTGCTCAAATAGAGCAACAGCCTAACATTTACGATGTTGTCCACGTCAAGTATTTTGACGAGgtatgcaccatgagatttaataagagatcgttttgtcatctagtttcttaagaatattttgtgcaatttgcatctgttgtttgctgcactaaaacaagct-----------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193410135|gb|FK372958.1|FK372958
EST:     AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG                         GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
genomic: AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgca ... gcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
EST: gi|193415174|gb|FK380092.1|FK380092
EST:     AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG                         GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
genomic: AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgca ... gcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
EST: gi|27426508|gb|CA938028.1|CA938028
EST:     AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG                         GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
genomic: AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgca ... gcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
EST: gi|23052777|gb|BU577268.1|BU577268
EST:     TTTAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG                         GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
genomic: AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgca ... gcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
EST: gi|213595247|gb|DB963980.1|DB963980
EST:     AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG                         GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
genomic: AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgca ... gcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
EST: gi|7233548|gb|AW568953.1|AW568953
EST:     AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG                         GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
genomic: AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgca ... gcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT