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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGCAGGTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAGgtaccagattcttctcaatccacaccctaaatattatcgatttcgttcttccattattcctttacattcctttgctttgtttctctctggaag

Basic information

species Glycine max
transcript GLYMA11G07810.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07810.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g47770.1 (Oryza sativa), 5'ss of exon 2
TGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGCAGGTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAGgta--ccagattcttctcaatccacaccctaaatat-tatcgatttcgttctt-ccattattcctttacattcctttgctttgtttctctctggaag---
|||| ||||| || |||||  |||| ||||| ||||||| ||||||||||||||| || ||| | || ||||||||||| ||||| ||||||||||||||||   ||     || | |      ||| | |||        | ||| || ||| ||  | |  | || | |  |||| | ||     ||    |||    
TGAGCAAGATCGCGTGCAACCGGCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGgtgaccccccccctcccccgcgaccactccaaacccacgcggtttttgtccttgccgctttcgcgtttcgtctctttccctttcgattcagatgaaatcg

upper sequence: GLYMA11G07810.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G116840_T03 (Zea mays), 5'ss of exon 2
TGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGCAGGTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAGgtaccagattcttctcaatccacaccctaaatattatcgatttcgttcttccattattcctttacattcctttgctttgtttctctctggaag-------
|||| ||||| |||||||   | || ||||| ||||||| ||||||||||||||| || ||| | || ||||||||||  ||||| ||| | |||||||||| ||         ||    | |  ||||     | ||     |   |   |  |  |        |  ||| | ||  ||||||  |||          
TGAGCAAGATCGCCTGCAGCCGCCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCGCCCGCGGGCTTCAAGCACAGGGTCACCGACGACCTCCAGAGgtgcccctccgccatcgtcgcccttcctatcccctttcctcagcaggcaatccctgctgtgcggggtctcttagattcctttctccgtggctccgtgctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15664873|gb|BI702244.1|BI702244
EST:     GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAG                         GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
genomic: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
EST: gi|151393796|gb|EV263671.1|EV263671
EST:     GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAG                         GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
genomic: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
EST: gi|254317299|gb|GR826244.1|GR826244
EST:     GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAG                         GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
genomic: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
EST: gi|10238896|gb|BE807792.1|BE807792
EST:     GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAG                         GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
genomic: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
EST: gi|254317300|gb|GR826245.1|GR826245
EST:     GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAG                         GTGGGTGGTTGAAGTCACTGGAGCT-CTGGGACACTTTACGCTAATGAGAC
genomic: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC