1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGAATTCGAGTAAACCTCACCCTAAGCTCAATGAAAGAATTCTGTCTTCTCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagaccccgattgttttggattttattttttggtcacttttaattataatgaaacatggtttattttttcaaagaaaaaacctattttgtttgtt...
species | Glycine max |
transcript | GLYMA11G07530.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTG GGCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|12689521|gb|BG155857.1|BG155857
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagac ... gcacatgcagGGCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTG GGCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|10235681|gb|BE804569.1|BE804569
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagac ... gcacatgcagGGCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTG GGCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|192316515|gb|FK009312.1|FK009312
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagac ... gcacatgcagGGCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTG GGCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|17022265|gb|BM093299.1|BM093299
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagac ... gcacatgcagGGCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTG GGCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|15661703|gb|BI699074.1|BI699074
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagac ... gcacatgcagGGCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTG GGCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|11273956|gb|BF324342.1|BF324342
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagac ... gcacatgcagGGCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTG GGCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|19452855|gb|BM954265.1|BM954265
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagac ... gcacatgcagGGCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTG GGCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|192333273|gb|FK026154.1|FK026154
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagac ... gcacatgcagGGCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: TCTGTCACGGAGAACAGTTGCTGCTCACCCCTGGCACGACTTAGAGATTG GGCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|15814337|gb|BI786612.1|BI786612
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagac ... gcacatgcagGGCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTG GGCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|6481455|gb|AW200726.1|AW200726
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagac ... gcacatgcagGGCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTG GGCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|15203687|gb|BI426455.1|BI426455
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagac ... gcacatgcagGGCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTG GGCCAGGAGCTCCAGCAGTTTTCAACTGT
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagac ... gcacatgcagGGCCAGGAGCTCCAGCAGTTTTCAACTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAATTCGAGTAAACCTCACCCTAAGCTCAATGAAAGAATTCTGTCTTCTCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGgtaaacagaccccgattgttttggattttattttttggtcacttttaattataatgaaacatggtttattttttcaaagaaaaaacctattttgtttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT