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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGTCCTCGTGATTCTCCAATACAGTGTTTTATCAGGAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCATgtaagtttgctacgttgtttcattgctgatgcatgtcatttctttttaagtagaaaaagggttgtcatatttctcttttttaagttacttgtcaaaaatt...

Basic information

species Glycine max
transcript GLYMA11G07410.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07410.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g01950.t01 (Vitis vinifera), 5'ss of exon 2
CCTGGTCCTCGTGATTCTCCAATACAGTGTTTTATCAGGAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCATgtaagtt-tgctacgttgtt--tcattgctgatgcatgtcatttct---ttttaagtagaaaaagggttgtcatatttctcttttttaagttacttgtcaaaaatt
|| || || |||||||||||||||||||| ||||| || ||| | ||||  || || |||||||| |||||| ||||||||  ||| ||||||   || |||  | |   ||  |  | ||  |  | |||| |   | || | | ||||   |  |||   |     ||   | ||||||  |  |  |    
CCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGAGCCACCTCTACATATCTTTTGTACTTTGGCCTGACACCTTgtaagccatgttaccctctcagtctatcttaatttacttgatttttcagtcttcacttgaaa--tgcctgtatgaagatcctggatgaagttatgttcccta----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207824997|gb|GD796303.1|GD796303
EST:     GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCAT                         CGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGG
genomic: GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCATgtaagtttgc ... aattatgcagCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGG
EST: gi|193727018|gb|FK662822.1|FK662822
EST:     GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCAT                         CGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGG
genomic: GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCATgtaagtttgc ... aattatgcagCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGG
EST: gi|208026174|gb|GD822500.1|GD822500
EST:     TATCTGTTGTACATTGGCCTGGTACCAT                         CGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAA
genomic: TATCTGTTGTACATTGGCCTGGTACCATgtaagtttgc ... aattatgcagCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAA
EST: gi|208281105|gb|GE079707.1|GE079707
EST:     GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCAT                         CGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGG
genomic: GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCATgtaagtttgc ... aattatgcagCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGG
EST: gi|8282411|gb|BE019972.1|BE019972
EST:     GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCAT                         CGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGG
genomic: GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCATgtaagtttgc ... aattatgcagCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGG