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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAAGTGAAAACATTTCAAATAATTGGCTTACAAGTCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTGATTGgtgagcatgaagccaaaacttgtttacataaagatgctaatgcaacgtagcaatttgcaaaaattgtatttttgtaacggttgtactacaaatcaagatcattaatagcctcctcaaatatcttttatgaggcgtgatgcttttatcaacttgctcgacaattgacatgatgaattgatattgtgcag

Basic information

species Glycine max
transcript GLYMA11G06840.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06840.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g10820.1 (Oryza sativa), 5'ss of exon 3
ATCAAAGTGAAAACATTTCAAATAATTGGCTTACAAGTCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTGATTGgt--gagcatgaagccaaaacttgtttacataaagatgctaatgcaacgtag-caatttgcaaaaattgtatttttgtaacggttgtactacaaatcaagatcattaatagcctcctcaaatatcttttatgaggcgtgatgcttttatcaacttgctcgacaattgacatgatgaattgatattgtgcag
|| || |||   || ||||| || || | | | ||||  || ||||| ||| |||| ||||||||||| || ||||||||||||||||| ||||| || |||  ||  |  ||   |  | |  |||  | |   |    | | ||  |    |||||||     |   | |||   |     | |                                                                                                         
ATGAAGGTGCGGACGTTTCAGATCATCGTCCTGCAAGGAATAATTGGATCATTGCCATGGACTGCCATAGTTTTCTTCACAATGTGGTTTGAACTCATCGgtatgatgacaaattgattattattttgaacactcaaatgattacagtgccctcaatttgacgtcaagatgtttaaatcctcttag---------------------------------------------------------------------------------------------------------

upper sequence: GLYMA11G06840.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G462325_T03 (Zea mays), 5'ss of exon 3
ATCAAAGTGAAAACATTTCAAATAATTGGCTTACAAGTCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTGATTGgtg-agcatgaagccaaaacttg-tttacataaagatgctaatgcaacgtagcaatttgcaaaaattgtatttttgtaacggttg-tactacaaatcaagatcattaatagcctcctcaaatatcttttatgaggcgtgatgcttttatcaacttgctcgacaattgacatgatgaattgatattgtgcag
|| |||||||| || ||||| || |||| | | ||||  || ||||| ||  ||||||||||||| || || ||||||||||||||||||||||| ||||||  |  |  || |  | |  |  |||  ||||| |  || ||  |||   ||  ||   |||| ||| ||| |   | || |    |||   |                                                                                                 
ATGAAAGTGAAGACGTTTCAGATCATTGTCCTGCAAGGGATCATTGGCTCGTTGCCGTGGACTGCTATAGTTTTCTTCACAATGTGGTTCGAACTCATTGgtacaatagcaaccatatatatacttttaataaaaagtctgat--aacaatgctctt---aaaatttgaattctaacatcgttgaacactcttag------------------------------------------------------------------------------------------------

upper sequence: GLYMA11G06840.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g01270.t01 (Vitis vinifera), 5'ss of exon 3
ATCAAAGTGAAAACATTTCAAATAATTGGCTTACAAGTCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTGATTGgtgagcatgaagccaaaacttgtttacataaagatgctaa-tgcaacgtag--caatttgcaaaaattgtatttttgtaacggt-tgtactacaaatcaagatcattaatagcctcctcaaatatcttttatgaggcgtgatgcttttatcaacttgctcgacaattgacatgatgaattgatattgtgcag
|| |||||| |||||||||| || |||| ||| || |   || |||| ||||| || |||||||||||||| |||||||| |||||||| ||||| ||||||||||   ||  ||| |    | | | |||   |   || ||||   ||     |  |   |   |||    | | |   |||   |  |  ||| |    |                                                                                         
ATAAAAGTGCAAACATTTCAGATCATTGTCTTGCAGGGTGTTGTTGGTTCACTACCATGGACTGCCATGGTTTTCTTCACCATGTGGTTTGAACTAATTGgtgagcgcaaattcaaga---atattcctaagtttatcaagtgcatgataaatttaactttgagggttggccgtgtcttttggtgcctgttgtaaacctctgt-----------------------------------------------------------------------------------------

upper sequence: GLYMA11G06840.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ14907 (Selaginella moellendorffii), 5'ss of exon 2
ATCAAAGTGAAAACATTTCAAATAATTGGCTTACAAGTCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTGATTGgtgagcatgaagccaaaacttgtttacataaagatgctaatgcaacgtagcaatttgcaaaaattgtatttttgtaacggttgtactacaaatcaagatcattaatagcctcctcaaatatcttttatgaggcgtgatgcttttatcaacttgctcgacaattgacatgatgaattgatattgtgcag
 | |  ||    || |||||  | || | ||| ||||   || |||| ||| | || ||||| || |||||||||||||||||||||||| |||| |||||  ||| |    | |    || |||   |     | || |  |   |   |   || |  |                                                                                                                               
GTGAGGGTACGGACTTTTCAGCTGATAGTCTTGCAAGGACTTGTTGGATCATTTCCTTGGACAGCGATGGTGTTCTTCACAATGTGGTTCCAACTTATTGgcaagctttc--ctatcgattttttctctcgttttcctgactcgtggctacctctttcccag------------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA11G06840.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ38311 (Selaginella moellendorffii), 5'ss of exon 2
ATCAAAGTGAAAACATTTCAAATAATTGGCTTACAAGTCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTGATTGgtgagcatgaagccaaaacttgtttacataaagatgctaatgcaacgtagcaatttgcaaaaattgtatttttgtaacggttgtactacaaatcaagatcattaatagcctcctcaaatatcttttatgaggcgtgatgcttttatcaacttgctcgacaattgacatgatgaattgatattgtgcag
                                           |||| ||| | || ||||| || |||||||||||||||||||||||| |||| |||||  ||| |        |  || |||   |     | || |  |   |   |   || |  |                                                                                                                               
------------------------------------------GTTGGATCATTTCCTTGGACAGCGATGGTGTTCTTCACAATGTGGTTCCAACTTATTGGCAAGCTTTCCTATCGATTTT-TTTCTCTCGTTTTCCTGACTCgtggctacctctttcccag------------------------------------------------------------------------------------------------------------------------------