Sequence
atgc intronic sequence ATGC exonic sequenceGTGGATTTGACACAGCACATGCAGCTGCTCGgtgagcacttgctccctctctacctattgttcagcttgtaatataagttttctacttcttgaaaccaatccccataaaatttcgtttttttgcatagagatttaaggtggttcgaaacttcgaatttataaaagtatttattttatctgtcttctgctcag
Basic information
species | Glycine max |
transcript | GLYMA11G05720.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G05720.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G67180.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGGATTTGACACAGCACATGCAGCTGCTCGgtgagcacttgctccctctctacctattgttcagcttgtaatataagttttctacttcttgaaaccaatccccataaaatttcgtttttttgcatagagatttaaggtggttcgaaacttcgaatttataaaagtatttattttatctgtcttctgctcag
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GTGGATTTGACACTGCACATGCTGCTGCTCGgtatattttcgaacctagctaacgcattactatactagtatcattttttgttcattattttg--ttattggctataatatgg-------gtcaataaatatttgagacag---------------------------------------------------
upper sequence: GLYMA11G05720.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g00220.t01 (Vitis vinifera), 5'ss of exon 3
GTGGATTTGACACAGCACATGCAGCTGCTCGgtgagcacttgctcc-----ctctctacctattgttcagcttgtaatataagttttctacttcttgaaaccaatccccataaaatttcgtttttttgcatagagatttaaggtggttcgaaacttcgaatttataaaagtatttattttatctgtcttctgctcag
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GTGGATTTGACACCGCACATGCAGCTGCTCGgtgagctcttcctctatattccttccaacttttgttcgtttcatacgaaaaatgaatgagcgaatgaaaattttctaaggagaatgtgatactg----aaagagattt----tttttcttcttttctttttcag--------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15815383|gb|BI787658.1|BI787658EST: GTGGATTTGACACAGCACATGCAGCTGCTCG TGCGTATGATAGAGCAGCTATTAAATTCCGGGGAGTGGAGGCAGACATCAA
genomic: GTGGATTTGACACAGCACATGCAGCTGCTCGgtgagcactt ... ttctgctcagTGCGTATGATAGAGCAGCTATTAAATTCCGGGGAGTGGAGGCAGACATCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGATTTGACACAGCACATGCAGCTGCTCGgtgagcacttgctccctctctacctattgttcagcttgtaatataagttttctacttcttgaaaccaatccccataaaatttcgtttttttgcatagagatttaaggtggttcgaaacttcgaatttataaaagtatttattttatctgtcttctgctcag
- - - - - - - - - - GCAGCT
- - - - - - - - - - CAGCTG
- - - - - - - - - - - AGCTGC
- - - - - - - - - - - GCTGCT